Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0748 ATGGCTTGTTCAAGTGGAAATGGAACAAGTAGTGGTGGATCAGGTTCACCGTGTGGGGCGTGCAAGTTTCTGAGGAGGAAGTGTGCTGCAGATTGCATATTTGCACCATACTTCTGCTCAGAACAAGGGCCTGCAAGATTTGCAGCCATACATAAGGTCTTTGGTGCAAGCAACGTTTCCAAGCTCTTGCTTCATATTCCCGCTCATGATCGCTGTGAGGCTGTTGTCACCATTGCTTATGAGGCTCAAGCTCGTATCAGAGACCCCGTTTATGGTTGCGTCTCTCACATTTTCGCATTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATGCAAGTGAAGGCTCAGCTGGCACAGAATCAAATAGAGAATCAATGGCCAGGGAATGTTGGTGGAGCCATGAACAATCCATTTGGTCACACCAATTACATGAACCCTCCTATATCTCCTCAGAGTTCACTTGAATCAATTGATCATCACAGCAGCAGCATCATTGATATGCATGACACAAGACCAGAGGATTTCAACTCATTCCAACAACAACAACAACAAGCTTCTTCTAAGAGAAGATCATATAACAACAACAACAACAATGACCTGGGTGAGCTGCAAGAGTTGGCACTTAGGATGATGAGGAACTAA 645 0.4512 MACSSGNGTSSGGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNQIENQWPGNVGGAMNNPFGHTNYMNPPISPQSSLESIDHHSSSIIDMHDTRPEDFNSFQQQQQQASSKRRSYNNNNNNDLGELQELALRMMRN* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0748 214 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Amo06g0748 214 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Amo06g0748 214 Coils Coil 97 124 - -
Amo06g0748 214 MobiDBLite consensus disorder prediction 176 203 - -
Amo06g0748 214 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 213 - -
Amo06g0748 214 MobiDBLite consensus disorder prediction 176 206 - -
Amo06g0748 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 10 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0748 Amo-Chr6 10545407 10546405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0748 4 214 AS2 family AT2G42430 56.048 1.29e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo06g0748 LOB 8.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0748 K13944 - gmx:100801508 270.011