Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0731 ATGGATGATGCTGGGCATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTAGCCCCGGACAGTGGTTGATGCAACATCAGCCTTCTATGAAACAAATTATGGCTCTTATGGCTGAAAGAGATGCACTTATTCAAGAAAGAAACCTGGCTCTTTCTGAGAAGAAGGCAGCACTTGCAGAGCGCGACATGGCTTTCCTGCAGCGGGATGCTGCGATCACAGAACGAAATAATGCTTTAATTGAACGAGACAATGCAATTGCTGCTCTTCAATATCGAGAAAATTCCCTAACCAACAGCAGTATGCCGTCCTCATGCCCTCCTGGATGCCAAATCTCACGGGGTATCAAACATATGCATCATCCACAGCAACAAGTACACCACATGCCTAATAATATGGGTGACGGTTCTTACACTGCAAGGGAAATGCACACAAGTGATTCCCTCCCAACTGTGACCATTCCTTCAGAGGCTGGGAAGTCCCGGCGAGGTAAACGACCAAAGGAACCCAAGTCAGTTTCACCAAATAAGAAGGCTTCAAAAGGTACTAGAAAGGTGAAGAGGGATGACGAAGATACTCACAAGATGATGTTTGGCAAGGCTAATGAATGGAAGAGTAGTCAGGAAATGATTAACGGGAGCGAAGACCTTAACAAGCAGTTAGAGGTGACAAAGGCCGATTGGAAATCCCAGGACTTGGCATTGAACCAAGTTGCATACGATGAGTCCACAATGCCAGCTCCCGGGTGTTCTTGTACTGGTGTTCTGAGGCAGTGTTACAAATGGGGAAATGGAGGTTGGCAATCTGCTTGTTGCACAACCACCCTTTCAGTGTATCCCCTTCCAGCAGTTCCTAACAAGAGGCATGCTCGGATAGGTGGCCGGAAAATGAGTGGAAGTGCTTTCAATAAGCTGCTTAGCCGGCTTGCTACCGAGGGTCATGATCTGTCAAACCCAGTTGACCTCAAGGACCATTGGGCCAAACATGGTACAAATCGGTATATCACGATAAAGTAG 1020 0.4676 MDDAGHRENGRHKADQYKSSPGQWLMQHQPSMKQIMALMAERDALIQERNLALSEKKAALAERDMAFLQRDAAITERNNALIERDNAIAALQYRENSLTNSSMPSSCPPGCQISRGIKHMHHPQQQVHHMPNNMGDGSYTAREMHTSDSLPTVTIPSEAGKSRRGKRPKEPKSVSPNKKASKGTRKVKRDDEDTHKMMFGKANEWKSSQEMINGSEDLNKQLEVTKADWKSQDLALNQVAYDESTMPAPGCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFNKLLSRLATEGHDLSNPVDLKDHWAKHGTNRYITIK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0731 339 MobiDBLite consensus disorder prediction 120 195 - -
Amo06g0731 339 MobiDBLite consensus disorder prediction 160 176 - -
Amo06g0731 339 MobiDBLite consensus disorder prediction 1 15 - -
Amo06g0731 339 SMART GAGA_bind_2 1 339 IPR010409 -
Amo06g0731 339 Pfam GAGA binding protein-like family 1 339 IPR010409 -
Amo06g0731 339 MobiDBLite consensus disorder prediction 126 156 - -
Amo06g0731 339 PANTHER - 214 339 IPR010409 -
Amo06g0731 339 PANTHER - 1 209 IPR010409 -
Amo06g0731 339 MobiDBLite consensus disorder prediction 1 22 - -
Amo06g0731 339 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 209 - -
Amo06g0731 339 PANTHER PROTEIN BASIC PENTACYSTEINE6 214 339 - -
Amo06g0731 339 Coils Coil 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0731 Amo-Chr6 10391751 10396171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0731 65 339 BBR or BPC Transcription factor family AT5G42520 61.379 6.20e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Amo06g0731 GAGA_bind 3e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0731 - - gmx:100783502 580.096