Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0721 ATGAAGATCCAGTGCGACGTGTGTAGCAAGGACGAGGCATCGGTGTTCTGCACCGCCGATGAAGCCGCCCTATGCAACGGCTGCGACCACCGTGTCCACCATGCCAACAAGCTCGCATCCAAACACCAACGCTTCTCTCTTCTCCGTCTCTCCACAAAGCAAAACTTCCCTCTCTGTGATGTTTGCAAGGAGAGAAGGGCCTATGTGTTCTGCCAGCAAGATAGAGCGATTCTATGCAAAGATTGTGATATTCCAATTCATTCTGCAAATGAACACACAAAGAAGCATACTAGATTCCTTGTCACCGGTGTTAAACTCTCGGATTCTGCTAAACTCTATTCAGCCGCCACTACTCCTCCTCCTCCTCCTTTGATTGGAAGTAATAGTAGTAGTGACTCTAATTCCAAAGCTTCTCAGATTCCAAAATCTTTGGTATCTGAGCCGACTTCTTCAGCAGCGGGGCTTCCCCCAATTAAGGGAGGAAGCTTGGTTGGTGTTGCCGAAGAAGACGCTTCCACGAGTACTCGCAGCATATCTGAGTACTTGATAGAGACTATACCTGGCTGGCAAGTTGAAGACTTTCTTGATTCATCAACTGTTCCCTTTGGTTTCTCTAAGGGTGGTGATGAGATGTTTTCAGTGTTTGACGGTGAAATTGATGGAAATATGTATGCATTTTCAACAATGGAGAAGATGGGGATGTGGGTTCCTCAAGCACCGCCACCACCACCACCACCTCTTGTATATCCTTCACAATTTTGTGAGGCAAAAGATGTCACCAACAACAACATCAAAGGTAGCATCAGCAGATCAAGGTTGGCGGATGATAATTTCATTGTCCCTCAGATTAATCTTCAATCCAACAACACCAAGAGACCAAGATATCTATGGTAG 894 0.4609 MKIQCDVCSKDEASVFCTADEAALCNGCDHRVHHANKLASKHQRFSLLRLSTKQNFPLCDVCKERRAYVFCQQDRAILCKDCDIPIHSANEHTKKHTRFLVTGVKLSDSAKLYSAATTPPPPPLIGSNSSSDSNSKASQIPKSLVSEPTSSAAGLPPIKGGSLVGVAEEDASTSTRSISEYLIETIPGWQVEDFLDSSTVPFGFSKGGDEMFSVFDGEIDGNMYAFSTMEKMGMWVPQAPPPPPPPLVYPSQFCEAKDVTNNNIKGSISRSRLADDNFIVPQINLQSNNTKRPRYLW* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0721 297 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Amo06g0721 297 MobiDBLite consensus disorder prediction 127 150 - -
Amo06g0721 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 294 - -
Amo06g0721 297 SMART bboxneu5 54 101 IPR000315 GO:0008270
Amo06g0721 297 SMART bboxneu5 4 47 IPR000315 GO:0008270
Amo06g0721 297 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 294 - -
Amo06g0721 297 MobiDBLite consensus disorder prediction 115 159 - -
Amo06g0721 297 CDD Bbox1_BBX-like 5 47 - -
Amo06g0721 297 Gene3D Classic Zinc Finger 1 100 - -
Amo06g0721 297 CDD Bbox1_BBX-like 58 101 - -
Amo06g0721 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Amo06g0721 297 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0721 Amo-Chr6 10270750 10272858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0721 1 297 C2C2-CO-like Transcription Factor Family AT1G75540 43.068 1.46e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo06g0721 zf-B_box 9.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0721 - - gmx:100807827 318.931