Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0720 ATGGATGTTATCTCCACCGCTATTATTTGGTGCAACCTAACATGGCAGATATGGCCTCATCATCATCAACCAAGCTACTACTCCTTCGGTTTGGGTCCGTCTAGCGAGAGAAACACCACCACAAACCTAAACGACGACGTTTCGGTGTCTTTCTCTGATGAGTCTAACCGGTTCGGGTTCACCGTCATGAGATCTTCTTCTTCCGGATCGGGTTTAGGAAGCGGCACCAATTGTCAAGACTGCGGTAACCAAGCCAAGAAAGACTGCGTCCACCTTCGCTGCCGAACCTGCTGCCGAAGCCGAGGGTTTCAATGTTCTACTCACGTTAAAAGCACCTGGGTTCCTGCTGCCAAACGACGCGAGCGCCAACACACTCTCGCGTCGTTACAGCAGCAGCAACCGGGGAGAGCAGGAGAAGGAGAAGGAGGAGGCGGCGATGTTCACTCTAGACGAACTAGAGAAGCCTCCGCCTGTGTTCCCATGCCGATTACCACTACAGGGTTGGAACTAGGGCAATTCCCTCCGGAGTTGAACTCACCGGCGGTGTTCCGGTGCGTCAAAGTCAGCCCAATGGACGCACCTGATGAGAGGTACGCGTATCAAACGGCTGTCAATATAGGAGGCCATGTTTTCAAAGGGATTCTCTACGATCAAGGTCCAGATGGTCCTTTCGCCACCAATGCCGCCACCGCCGGCGAAGGCTCCTCCCACGGAGGAGCTGAGCCTCATCATCAACAACTGAGTCTCATAACAACCACCACCGGTGCCGGCATCACATTTGACCCTTCACAGCTTTATCCGGCGCCGATGAACGCTTTCATGGCCGGTACGCAATTCTTTCCGCCCCCGAGAACCTAG 858 0.542 MDVISTAIIWCNLTWQIWPHHHQPSYYSFGLGPSSERNTTTNLNDDVSVSFSDESNRFGFTVMRSSSSGSGLGSGTNCQDCGNQAKKDCVHLRCRTCCRSRGFQCSTHVKSTWVPAAKRRERQHTLASLQQQQPGRAGEGEGGGGDVHSRRTREASACVPMPITTTGLELGQFPPELNSPAVFRCVKVSPMDAPDERYAYQTAVNIGGHVFKGILYDQGPDGPFATNAATAGEGSSHGGAEPHHQQLSLITTTTGAGITFDPSQLYPAPMNAFMAGTQFFPPPRT* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0720 285 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 172 220 IPR006511 -
Amo06g0720 285 PANTHER PROTEIN SHI RELATED SEQUENCE 7 15 283 - -
Amo06g0720 285 MobiDBLite consensus disorder prediction 120 153 - -
Amo06g0720 285 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 77 119 IPR006510 -
Amo06g0720 285 Pfam Domain of unknown function (DUF702) 75 221 - -
Amo06g0720 285 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 15 283 IPR007818 GO:0003700|GO:0006355
Amo06g0720 285 MobiDBLite consensus disorder prediction 225 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0720 Amo-Chr6 10256326 10257552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0720 25 285 C2H2 Transcription Factor Family AT1G75520 46.763 2.71e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo06g0720 DUF702 7.7e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0720 - - gmx:100807290 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0720 06 10256326 10257552 Amo08g0149 08 2658623 2660038 PCT
Amo06g0720 06 10256326 10257552 Amo17g2194 17 112766598 112777868 PCT
Amo08g0149 08 2658623 2660038 Amo06g0720 06 10256326 10257552 PCT
Amo17g2194 17 112766598 112777868 Amo06g0720 06 10256326 10257552 PCT