Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0677 ATGTCTTCCTTCCGAAACTGTGTTAATGGCGGTTGCTCTCTTGGTCCAAAGGAGAGACTAATGAATCTGATGAATCGATCTGAAAACAAGTTTTGTGCTGATTGTGGAACTCCAGATCCGAAATGGGCATCTACAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCGTTCATCGAAGCTTAGGAGTCCACATAACAAAGGTTCTATCGTTGAAGCTCGATGATTGGACAGATGAAGAAGTTGATACATTGCTCAATTTTGGTGGAAACACAACACTAAACAAGAAGTATGAAGCTTGCCTCCCACCTAACATTAAAAAACCGGACCCAAATTCATCAATTGAGGAACGCTCTGATTTTATAAGGCGAAAGTATGAGTTGTTGCAATTTACGGGTGGTGACAACAAATCACAACCTTGTCAAGCAAGTAATTCATCACCGGTTCAAAGTGATTCTCCTTCATTCAGTGATTCTCCGATGGACAAGAAGCAACACGAAAAACATAAACATCGAATTGGGAATGCATTGCGACATAATTGGGGAAAGAAAGATCACGAGAATAAAACTCCAAAGAAAACCAACTCATCATTGGCAGGTATGGTTGAATTTGTTGGATTAATTAAGGTTAATGTGGTAAAAGGCACTAACTTGGTTGTTCGAGATGTAGTGTCTAGTGACCCTTATGTTGTCCTTTCTTTGGTCAGTAAAAAAACAGTGTCAATAAAGAAGAGTTTGAATCCAGTGTGGAATGAAAGCCTAATGTTGTCAATTCCAGAAAATATTCCTCCCCTTAAAGTGTGTGTATATGATAAGGACAAATTTTCAAACGATGATTTTATGGGTGAGGCTGAAATAGACATTGAACCTCTAGTGATAGCTACAAAAGAATATGAGGAGTCTAAAAGCTATGAGCATATGCAACAACATGGGGGATGTGGTTCAACCACAGAAAACACTTCCATTTGTGAAGATGATGCTAATGCCAATCACAAAGGAGAGATGAAACAACATTTCTCAATTAGGTTACAAAATGTTGAGAGTGGTGTGTTAGAGATTGAGATTGAATGTGTTCCTCTTACTCAATAA 1089 0.3838 MSSFRNCVNGGCSLGPKERLMNLMNRSENKFCADCGTPDPKWASTSLGVFICIKCSGVHRSLGVHITKVLSLKLDDWTDEEVDTLLNFGGNTTLNKKYEACLPPNIKKPDPNSSIEERSDFIRRKYELLQFTGGDNKSQPCQASNSSPVQSDSPSFSDSPMDKKQHEKHKHRIGNALRHNWGKKDHENKTPKKTNSSLAGMVEFVGLIKVNVVKGTNLVVRDVVSSDPYVVLSLVSKKTVSIKKSLNPVWNESLMLSIPENIPPLKVCVYDKDKFSNDDFMGEAEIDIEPLVIATKEYEESKSYEHMQQHGGCGSTTENTSICEDDANANHKGEMKQHFSIRLQNVESGVLEIEIECVPLTQ* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0677 362 Pfam C2 domain 207 294 IPR000008 -
Amo06g0677 362 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 298 IPR035892 -
Amo06g0677 362 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Amo06g0677 362 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Amo06g0677 362 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Amo06g0677 362 CDD ArfGap 20 126 - -
Amo06g0677 362 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Amo06g0677 362 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 13 362 - -
Amo06g0677 362 MobiDBLite consensus disorder prediction 133 195 - -
Amo06g0677 362 Gene3D C2 domain 204 359 IPR035892 -
Amo06g0677 362 SMART arf_gap_3 18 139 IPR001164 GO:0005096
Amo06g0677 362 ProSiteProfiles C2 domain profile. 189 302 IPR000008 -
Amo06g0677 362 MobiDBLite consensus disorder prediction 133 158 - -
Amo06g0677 362 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Amo06g0677 362 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Amo06g0677 362 Gene3D Arf GTPase activating protein 14 139 IPR038508 -
Amo06g0677 362 SMART C2_3c 207 300 IPR000008 -
Amo06g0677 362 MobiDBLite consensus disorder prediction 178 192 - -
Amo06g0677 362 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 362 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0677 Amo-Chr6 9628276 9639832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0677 11 362 C2H2 Transcription Factor Family AT4G21160 44.693 2.85e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0677 K12486 - gmx:100789552 425.246