Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0666 ATGCCGAAAGATTCATCAATCTCAAGTTCTGACGATGATTCGGTTGTGTTCTTGGGGGATGTTACACCCCAAGGTAACCGTAACCGTAACCGTTACCGTCGTGTGCGTCGACGTGTGCTTGAAGGTGACAACGGAATACCTGCCAACCCTAACCCTAACGATAATCGTAGCCTAATCGTTGGAGGTCATGATCTGCGTGCCAGGAGGACCGTGACGGGTAATAACCAGCCCAACCGTGACGGCAACGCTTCTGAAGAGAGTACTCAAGCGGCTAAGAAGGCAGCAGGTCAAGCAAGAAAGAGTGGTGATGCAAACTTTCATGTCGGTGAGAGCAGCAAAATCCAAAAGAGGAAGACGAAGAAGAGGGGGAGGAAGAAGAAGAAGAAGGAGAACGACGATGTTTTGGATGAAATGACGAATAAGTTACTACGCGCCGGTTGGGAAATTGAGATTGATGAAAAAGATGAAGAAACTGTTTTCTATGATCTGAAGGGGAGAGCTTATACCAATTGCATCATAGCTGCGTACGAGTGTTTGAAAAAGAAGTATGAGGAGCGCAAAGGAAGAGGGATCTATTATTTGAAGAATTACAAGTTTACTCCCATCAAGGATGATGATTTCGAGAAGCTTCTGTCATGGAAAGATGCTAAGAAGAGGAAAAAAAAAGATGAAGCTCATGATCCAAACCCTAATAATAACAATTGTAATAAGAGGGGAAAGAATAGCAGGGAAGACGCGAACAAGAAGAAGCAGAAGCAGAAGGTGGAAACGAGCATGAAAGGAAAAGAGAAGGTTGTTTACGATGAATCTGATTCTGATTCTGATTCTGACAAGGATCCAAATGATGACACGTGTCTTCTCTGTGCAAATGCTCGAGAAGGCACTCTGGTTTGTTGCGACGGTTGTCCTTCTTGTTTCCATCTGAGCTGCTTGAAATTACCTGGGGTTCCACCTGGTGACTGGTACTGCAGTTATTGCAGATGCAAATTTTGTGGGTTGATGACTGGTGCAGCTGATGATCCTATGTCACGCACATGTTGCTTTTGCGAGCATAAATATCATAGGTTCTGTTCACCCATGACTGGTGGCATCGTGATTGATCTTTCAGATAATCCGTTACACTTTTGCAGTAACAAATGCGAACAGTTGTTTGGGAGAGTTCAAGGGCTTCTTGGGGTCAAACATGAAATTGGAGATGGGTTTTCTTGCACTTTTTTATCTGGATTTGAGAATAATCGTCCTACCCAACTTCCAGAATGCCATGACAAGCTGGTTAGGGCACAGAAAATAATGCAAGATGGATTCAAACCAGGAATTGACCATAGAACCGGGATAAATTTGATACAAAATGTTGTATACAGTCGTGGGTCAAAGTTCAATCGCATGAATTATACAATGTTCTTTACTGCAATTATGGAACGGGACGACGAGATTATATGTGTGGCATCACTAAGGGTTCATGAAAACAAAGTAGCAGAGATGCCACTAATTACAACCCGTGGTATGTATAGGCGACAAGGAATGTGTACCCGATTCATGACAGTCATCGAATCTGTACTAAGCAGTTTGGGTGTTGACTTATTGGTCATACCATCAATCAAAGAACGCGAGAAGATTTGGGTTTCAGTGTTTGGGTTTGAACCCTTTGATCTGGAAACGAAAACTAGAACTGAAAAAATGAAAATTTTAGTTTTTCCTAATACTGAGAAGAACCAATTCTAA 1722 0.4257 MPKDSSISSSDDDSVVFLGDVTPQGNRNRNRYRRVRRRVLEGDNGIPANPNPNDNRSLIVGGHDLRARRTVTGNNQPNRDGNASEESTQAAKKAAGQARKSGDANFHVGESSKIQKRKTKKRGRKKKKKENDDVLDEMTNKLLRAGWEIEIDEKDEETVFYDLKGRAYTNCIIAAYECLKKKYEERKGRGIYYLKNYKFTPIKDDDFEKLLSWKDAKKRKKKDEAHDPNPNNNNCNKRGKNSREDANKKKQKQKVETSMKGKEKVVYDESDSDSDSDKDPNDDTCLLCANAREGTLVCCDGCPSCFHLSCLKLPGVPPGDWYCSYCRCKFCGLMTGAADDPMSRTCCFCEHKYHRFCSPMTGGIVIDLSDNPLHFCSNKCEQLFGRVQGLLGVKHEIGDGFSCTFLSGFENNRPTQLPECHDKLVRAQKIMQDGFKPGIDHRTGINLIQNVVYSRGSKFNRMNYTMFFTAIMERDDEIICVASLRVHENKVAEMPLITTRGMYRRQGMCTRFMTVIESVLSSLGVDLLVIPSIKEREKIWVSVFGFEPFDLETKTRTEKMKILVFPNTEKNQF* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0666 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 380 IPR013083 -
Amo06g0666 573 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 70 270 - -
Amo06g0666 573 MobiDBLite consensus disorder prediction 1 133 - -
Amo06g0666 573 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 278 569 - -
Amo06g0666 573 PANTHER PHD FINGER PROTEIN 12 70 270 IPR042163 GO:0003714|GO:0045892
Amo06g0666 573 MobiDBLite consensus disorder prediction 238 271 - -
Amo06g0666 573 MobiDBLite consensus disorder prediction 1 28 - -
Amo06g0666 573 MobiDBLite consensus disorder prediction 69 91 - -
Amo06g0666 573 ProSiteProfiles Zinc finger PHD-type profile. 282 329 IPR019787 -
Amo06g0666 573 Pfam PHD-finger 285 329 IPR019787 -
Amo06g0666 573 PANTHER PHD FINGER PROTEIN 12 278 569 IPR042163 GO:0003714|GO:0045892
Amo06g0666 573 SUPERFAMILY FYVE/PHD zinc finger 263 328 IPR011011 -
Amo06g0666 573 MobiDBLite consensus disorder prediction 219 281 - -
Amo06g0666 573 ProSitePatterns Zinc finger PHD-type signature. 285 326 IPR019786 -
Amo06g0666 573 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 465 532 IPR016181 -
Amo06g0666 573 SMART PHD_3 284 327 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0666 Amo-Chr6 9486408 9494724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0666 279 572 PHD Transcription Factor Family AT4G14920 41.860 6.33e-76 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo06g0666 PHD 4.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0666 - - ahf:112696224 1066.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0044 16 724484 725714 Amo06g0666 06 9486408 9494724 hybridization