Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0654 ATGTCGAAAGATTCATCAATCTCGAGTTCTGACGATGATTCGGTTGTGTTCTTGGGGGATGTTACACCCCAAGGTAACCGTAACCGTAACCGTTACCGTCGTGTGCGTCGACGCATGCTTGAAGGTGACAACGGAATACCTGCCAACCCTAACCCTAACGATAACCGTAGCCTAATCGTTGGAGGTCATGATCTGCGTGCGAGGAGGACCGTGACGGGTAATAACCAGCCTAACCGTGACGGCAACGCTTCTGAAGAGAGTACTACAGCGACTAAGAAGGCAGCAGGTCAAGTAAGAAAGAGTGGTGATGCAAACTTTCAAGTCGGTGAGAGCAGCAAAATCCAAAAGAGGAAGACGAAGAAGAGGGGGAGGAAGAAGAAGAAGAAGGAGAACGACGATGTTTTGGATGAAATGAGGAATAAGTTGCTACGCGCCGGTTGGGAAATTGGGATTGATGAAAAAGATGAAGAAACTGTTTTCTATGATCTGAARGGGAGAGCTTATACCAATTGCATCATAGCTGCGTACGAGTGTTTGAAAAAGAAGTATGAGGAGCACAAAGGAAGAGGGATCTATTATTTGAAGAATTTCAAGTTTACTCCCATCAAGGATGATGATTTCGAGAAGCTTCTGTCATGGAAAGATGCTAAGAAGAGAAAAAGAAAAGATGAAGCTCATGACCCAAACCCTAATAATAACGATCGTAATAAGAGGGGAAAGAATAGCAGGGAAGACGCGAACAAGAAGAAGCAGAAACAGAGGGTGGAAACGAGCAGGAAAGGAAAAGAGAAGGTTGTTTACGATGAATCTGATTCTGATTCTGATTCTGATTCTGACAAGGATCCAAATGATAACACGTGTCTTCTCTGTGCAAATGCTCGAGAAGGCACTCTAGTTTGTTGCGACGGTTGTCCTTCTTCTTTTCATCTGAGCTGCTTGAAATTACCTGGGGTTCCACCTGGTGACTGGTACTGCAGTTATTGCAGATGCAAATTTTGTGGGTTGATGACTGGTGCAGCTGATGATCCTATGTCACGCACATGTTGCTTTTGCGAGCATAAATATCATAGGTTCTGTTCACCCATGACTGGTGGTATCATCATTGATCTTTCAGATAATCCGTTACACTTTTGCAGTAACAAATGCGAACAGCTAATGTTCATTTGCTATTTTGTCCTCATAGTTGTTGCGAGAGTTCAAGGGCTTCTTGGGATCAACATGAATTGGAGATGGTTTTCTTGCACTTTTTTATCTGGATTTGAGAATAATCGTCCTTCCCAACTTCCAGAATGTCATGACAAGCTGTTTAGTGCACTGAAAATAATGCAAGATGGATTCAACCTGGATATGATCATAGAACAGGATTATATATATGTATATGTATATATATATATTATTTTTGGGCAGGTCAAAGTTCAATCGCATGAATATACAATGTTCTTTACTGCAATTATGGAACGGGACGACGAGATTATATGTGTGGCATCTCTAAGTAGCAGAGATGCCACTATTACAACCCGTGGTATGTATAGGCGACAAGGAATGTGTACCCGCTTCATGACAGTCATCGAATCTGTACTAAGCAGTTTGGGTGTTGACTTATTGGTCATACCATCAATCAAAGAACGCGAGAAGATTTGGGTTTCAGTGTTTGGGTTTGAACCCTTTGATCTGGAAACGAAAACTAGAACTGAAAAA 1698 0.4211 MSKDSSISSSDDDSVVFLGDVTPQGNRNRNRYRRVRRRMLEGDNGIPANPNPNDNRSLIVGGHDLRARRTVTGNNQPNRDGNASEESTTATKKAAGQVRKSGDANFQVGESSKIQKRKTKKRGRKKKKKENDDVLDEMRNKLLRAGWEIGIDEKDEETVFYDLKGRAYTNCIIAAYECLKKKYEEHKGRGIYYLKNFKFTPIKDDDFEKLLSWKDAKKRKRKDEAHDPNPNNNDRNKRGKNSREDANKKKQKQRVETSRKGKEKVVYDESDSDSDSDSDKDPNDNTCLLCANAREGTLVCCDGCPSSFHLSCLKLPGVPPGDWYCSYCRCKFCGLMTGAADDPMSRTCCFCEHKYHRFCSPMTGGIIIDLSDNPLHFCSNKCEQLMFICYFVLIVVARVQGLLGINMNWRWFSCTFLSGFENNRPSQLPECHDKLFSALKIMQDGFNLDMIIEQDYIYVYVYIYIIFGQVKVQSHEYTMFFTAIMERDDEIICVASLSSRDATITTRGMYRRQGMCTRFMTVIESVLSSLGVDLLVIPSIKEREKIWVSVFGFEPFDLETKTRTEK 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0654 566 SMART PHD_3 286 329 IPR001965 -
Amo06g0654 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 386 IPR013083 -
Amo06g0654 566 MobiDBLite consensus disorder prediction 218 271 - -
Amo06g0654 566 MobiDBLite consensus disorder prediction 1 28 - -
Amo06g0654 566 ProSiteProfiles Zinc finger PHD-type profile. 284 331 IPR019787 -
Amo06g0654 566 MobiDBLite consensus disorder prediction 1 132 - -
Amo06g0654 566 SUPERFAMILY FYVE/PHD zinc finger 259 330 IPR011011 -
Amo06g0654 566 PANTHER PHD FINGER PROTEIN 12 67 273 IPR042163 GO:0003714|GO:0045892
Amo06g0654 566 PANTHER PHD FINGER PROTEIN 12 280 563 IPR042163 GO:0003714|GO:0045892
Amo06g0654 566 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 67 273 - -
Amo06g0654 566 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 280 563 - -
Amo06g0654 566 Pfam PHD-finger 287 331 IPR019787 -
Amo06g0654 566 MobiDBLite consensus disorder prediction 69 95 - -
Amo06g0654 566 MobiDBLite consensus disorder prediction 218 282 - -
Amo06g0654 566 ProSitePatterns Zinc finger PHD-type signature. 287 328 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0654 Amo-Chr6 9265884 9273607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0654 281 553 PHD Transcription Factor Family AT4G14920 34.643 3.96e-42 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo06g0654 PHD 5.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0654 - - ahf:112696224 873.233