Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0644 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTGCCTTTGGTTCTGCTCTTCTTGTCAAGCACAAGCATGAAAAGAAAAAATATGTCCTCAAGAAGATTCGCCTTGCTCGCCAGACTGACAGAGCCCGAAGGTCTGCCCATCAGGAGATGGAGCTTATATCTAAAGTTCAAAATCCATTTATAGTGGAGCATAAAGATTCCTGGGTAGAAAGGGGTTGTTTTGTATGTATTGTCTTAAGTTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTCATTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAACTGCTGATGGCCCTTGATTACTTGCATGTAAATCACATACTTCATCGAGATGTCAAGTGTTCAAATATTTTCTTGACAAAAGATCGAGACATCCGTCTAGGTGACTTTGGCCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTTGTTGGGACCCCAACTTATATGTGTCCTGAGCTTCTTGCTGACATACCCTATGGTTCTAAGTCAGACATCTGGTCTTTGGGATGCTGTGTTTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTTTTGATATACAAGCATTGATTAACAAAATAAACAAGTCTATAGTGGCTCCACTTCCAACTATATACTCTAGTGCTTTCCGAGGGCTTGTGAAAAGCATGCTACGGAAAAATCCAGAGCTTAGGCCAACGGCTGGTGAGTTATTGAATCATCCACATCTTCAGCCTTACATTCAAAAAATTCAGCTACAACTAAGTAGCCCCAGAAGTAGTAGTACTTTGGCATTTCAATGGCATGAGAAAAACCATGCAAGAAGTAGGTTCATAGAGCCAGAATCTGTTTCTTCTCTTTCTGGCCAAGACAAATGCTTGTCATTAAGCAGTGACAACAACAGGTCCTTGAATCCAAGTGTTTCTGGAACTGATGAACAAGGATCTCAGTGTTCTTCTACCCAAAGAGCAATTGGATCATCATCCACTTATTCAAAAGAGAAGCTCTATGAACTATCTATTGSCTGTGTCCCTGACAAATGCAATACTTATAAATCATCAAAAGCTAGAAAGTCCTCAATTGTTCAGAGACCTTCAACACTGAGAACTGCTAAGGCTTCTGCCACACTCAGAGGCCAGAAAATGACTCCATCTAGGACACACCCAATGCCTAATGCAGCAATCCGCAGAGCATCAATTCCACCACCAAGTAGAGCAAACATTGGCCTTCTCCAATGTGTGGAGTCTCCCAATGTCTCGGTTAACACTCCGAGAATCGACAAGATTGCAGAGTTCCCTCTGGCCTCATATGAGGATCATTTCTTCCCTGGCAAAGTAACATGCCCATCACCATCACCATCACCATCACCATCACCAACATCAATAATAACCACGAGCGAGGAAAAGTGCATGATCCAGGTTGTGGACAAAGCCACTGTCCACAACACCAACAGTGAACACWCTGCTGATCATAAGCATCGATTCGACACCTCGTCGTTGCAGCAACGTGCAGAGGCATTGGAGGGGCTGCTAGAGTTCAGTGCAAGGCTGCTACAACAACACAGGTTTGATGAACTTGGAGTCTTGTTGAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGGCCAAGAGCTTCAAACATACTCTTCTTTAA 1713 0.4279 MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTDRARRSAHQEMELISKVQNPFIVEHKDSWVERGCFVCIVLSYCEGGDMAEAIKKANGVHFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPTYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKAFDIQALINKINKSIVAPLPTIYSSAFRGLVKSMLRKNPELRPTAGELLNHPHLQPYIQKIQLQLSSPRSSSTLAFQWHEKNHARSRFIEPESVSSLSGQDKCLSLSSDNNRSLNPSVSGTDEQGSQCSSTQRAIGSSSTYSKEKLYELSIXCVPDKCNTYKSSKARKSSIVQRPSTLRTAKASATLRGQKMTPSRTHPMPNAAIRRASIPPPSRANIGLLQCVESPNVSVNTPRIDKIAEFPLASYEDHFFPGKVTCPSPSPSPSPSPTSIITTSEEKCMIQVVDKATVHNTNSEHXADHKHRFDTSSLQQRAEALEGLLEFSARLLQQHRFDELGVLLKPFGPEKVSPRETAIWLAKSFKHTLL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0644 570 PANTHER SERINE/THREONINE-KINASE NEK4 473 559 - -
Amo06g0644 570 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0644 570 SUPERFAMILY Protein kinase-like (PK-like) 1 309 IPR011009 -
Amo06g0644 570 CDD STKc_Nek 3 258 - -
Amo06g0644 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Amo06g0644 570 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 473 559 - -
Amo06g0644 570 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 494 - -
Amo06g0644 570 PANTHER SERINE/THREONINE-KINASE NEK4 1 494 - -
Amo06g0644 570 MobiDBLite consensus disorder prediction 304 339 - -
Amo06g0644 570 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0644 570 Gene3D Transferase(Phosphotransferase) domain 1 86 325 - -
Amo06g0644 570 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Amo06g0644 570 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0644 570 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Amo06g0644 570 MobiDBLite consensus disorder prediction 395 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0644 Amo-Chr6 9121179 9124556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0644 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 1.67e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Amo06g0644 Pkinase 1.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0644 K08857 - gmx:100810347 757.673