Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0616 ATGTTATGCTTCTCGGATGCAGGTGACTTTGGCCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTTGTTGGGACGCCAACTTATATGTGTCCTGAGCTTCTTGCTGACATACCTTATGGTTCTAAGTCAGACATCTGGTCTTTGGGATGCTGTGTTTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTTTTGATATACAAGCATTGATTAACAAAATAAACAAGTCTATAGTGGCTCCACTTCCAACTATATACTCTAGTGCTTTCCGAGGGCTTGTGAAAAGCATGCTACGGAAAAATCCAGAGCTTAGGCCAACGGCTGGTGAGTTATTGAATCATCCACATCTTCAGCCTTACATTCAAAAAATTCAGCTACAACTAAGTAGCCCCAGAAGTAGTAGTACTTTGGCATTTCAATGGCATGAGAAAAACCATGCAAGAAGTAGGTTCATAGAGCCAGAATCTGTTTCTTCTCTTTCTGGCCAAGACAAATGCTTGTCATTAAGCAGTGACAACAACAGGTCCTTGAATCCAAGTGTTTCTGGAACTGATGAACAAGGATCTCAGTGTTCTTCTACCCAAAGAGCAATTGGATCATCATCCACTTATTCAAAAGAGAAGCTCTATGAACTATCTATTGGCTGTGTCCCTGACAAATGCAATACTTATAAATCATCAAAAGCTAGAAAGTCCTCAATTGTTCAGAGACCTTCAACACTGAGAACTGCTAAGGCTTCTGCCACACTCAGAGGCCAGAAAATGACTCCATCTAGGACACACCCAATGCCTAATGCAGCAATCCGCAGAGCATCAATTCCACCACCAAGTAGAGCAAACATTGGCCTTCTCCAATGTGTGGAGTCTCCCAATGTCTCGGTTAACACTCCGAGAATCGACAAGATTGCAGAGTTCCCTCTGGCCTCATATGAGGATCATTTCTTCCCTGGCAAAGTAACATGCCCATCACCATCACCATCACCATCACCAACATCAATAATAACCACGAGCGAGGAAAAGTGCATGATCCAGGTTGTGGACAAAGCCACTGTCCACAACACCAACAGTGAACACTCTGCTGATCATAAGCATCGATTCGACACCTCGTCGTTGCAGCAACGTGCAGAGGCATTGGAGGGGCTGCTAGAGTTCAGTGCAAGGCTGCTACAACAACACAGGTTTGATGAACTTGGAGTCTTGTTGAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGGCCAAGAGCTTCAAACAAACTCTTCTATAA 1293 0.4377 MLCFSDAGDFGLAKMLTSDDLASSVVGTPTYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKAFDIQALINKINKSIVAPLPTIYSSAFRGLVKSMLRKNPELRPTAGELLNHPHLQPYIQKIQLQLSSPRSSSTLAFQWHEKNHARSRFIEPESVSSLSGQDKCLSLSSDNNRSLNPSVSGTDEQGSQCSSTQRAIGSSSTYSKEKLYELSIGCVPDKCNTYKSSKARKSSIVQRPSTLRTAKASATLRGQKMTPSRTHPMPNAAIRRASIPPPSRANIGLLQCVESPNVSVNTPRIDKIAEFPLASYEDHFFPGKVTCPSPSPSPSPTSIITTSEEKCMIQVVDKATVHNTNSEHSADHKHRFDTSSLQQRAEALEGLLEFSARLLQQHRFDELGVLLKPFGPEKVSPRETAIWLAKSFKQTLL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0616 430 PANTHER SERINE/THREONINE-KINASE NEK4 333 419 - -
Amo06g0616 430 MobiDBLite consensus disorder prediction 235 266 - -
Amo06g0616 430 MobiDBLite consensus disorder prediction 235 263 - -
Amo06g0616 430 MobiDBLite consensus disorder prediction 166 202 - -
Amo06g0616 430 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0616 430 PANTHER SERINE/THREONINE-KINASE NEK4 8 312 - -
Amo06g0616 430 Gene3D Transferase(Phosphotransferase) domain 1 6 190 - -
Amo06g0616 430 Pfam Protein kinase domain 8 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0616 430 SMART serkin_6 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0616 430 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 8 312 - -
Amo06g0616 430 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 333 419 - -
Amo06g0616 430 SUPERFAMILY Protein kinase-like (PK-like) 8 172 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0616 Amo-Chr6 8805230 8807541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0616 9 121 MAP Kinase Kinase Kinase AT1G53570 40.000 1.95e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Amo06g0616 Pkinase 3.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0616 K08857 - gmx:100810347 499.204