Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0596 ATGGACACCCACTCCTCTCACGGCGCTGGGCCCCTCCGTTCCCGGAGCTCGCAGTCCCCTTCTCCCTCTCACTCGGCCTCCGCCTCCGCCACCTCTTCCATCCACAAGCGCAAGCTCGCGTCTGAAGACCACGCGCCACCCTTTCCCCCTTCCTCCTTCTCCGCCGAGACCCGCGACGGCGCTCTCACTTCCAACGACGACCTCGAGAGCATCTCCGCCCGCGGCGCAGACTCGGATTCCGACGCTGACGACTCCGAGGACGCAGTCGTCGACGACGACGAGGACGACTACGACAATGACTCCTCCATGCGCAACTTCACCGCCTCCAGGCTCGACGGAAGTGCTGGCGCCGGTGGAGCCTCTGCACCGCGCAACACCAAGCTCAAGACCGAAAACTCAGTCACCGTGAAGATTGAGAGCTCCGACGGTGTCAACAAGGACGCTGGCGTAGCTGGAAATTCCGCCGCCGTGGGCACAGTTGCCACCGCCGGATCCGTCCCAGGTATCGTGGTGAAGGAAGATGTTAGCAAGATATTTACGGATAATTTGCAGACGAGTGGAGCTTACAGTGCGAGAGAAGAGAGTCTGAAGAAAGAGGAGGAAGCGGGAAGGCTCAAATTTGTGTGCTACTCAAATGACGGTGTTGATGAGCATATGGTTTGGTACTGCTTCTCAGACATTTTTCTGCGTTGTTCTTATATGTTAATAGGATTGAAGAATATATTTGCTAGGCAACTTCCCAATATGCCAAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGGAATCATGTTGTTGGAGGCATTACATATCGGCCATATGTAAGCCAGAAGTTTGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAAGGTTATGGTACTAGATTGATGAATCACTTAAAACAGCATGCACGTGATGTAGATGGGCTGACACATTTTTTAACTTATGCTGACAACAATGCTGTTGGATACTTTATCAAACAGGGATTTACGAAGGAGATTCACTTGGAGAAAGATAGATGGCAAGGGTATATAAAAGACTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTATATCGATCTATCAACAATGATTCGTCGTCAACGACAGGCTATTGATGAAAAGATCAGAGAGTTGTCAAATTGTCACATTGTTTATGCTGGCATTGATTTTCAGAAGAAAGAAGCTGGAATTCCTAAAAAAATTGTCAAAGTTGAGGACATCCCTGGATTGAGAGAGGCTGGTTGGACCCCTGATCAGTGGGGTCATTCAAGATTCAGACTAAGCAACGCTACAGACAATGCTACAAATATGAAGCATTTGACAGCGTATATGCGTTCCCTTCTGAAGTCAATGCATGATCATACTGATGCTTGGCCATTCAAGGAACCAGTTGATGCACGAGATGTTCCTGATTATTATGACATAATTAAAGATCCAATAGATCTGAAGACAATGACTAAGAGGGTGGAATCAGAACAATATTATGTGACATTTGAGATGTTTGTTGCTGATGTGAAGAGAATGTTTCAGAATGCACGCACATATAACTCTCCCTGA 1617 0.4756 MDTHSSHGAGPLRSRSSQSPSPSHSASASATSSIHKRKLASEDHAPPFPPSSFSAETRDGALTSNDDLESISARGADSDSDADDSEDAVVDDDEDDYDNDSSMRNFTASRLDGSAGAGGASAPRNTKLKTENSVTVKIESSDGVNKDAGVAGNSAAVGTVATAGSVPGIVVKEDVSKIFTDNLQTSGAYSAREESLKKEEEAGRLKFVCYSNDGVDEHMVWYCFSDIFLRCSYMLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYIDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIVKVEDIPGLREAGWTPDQWGHSRFRLSNATDNATNMKHLTAYMRSLLKSMHDHTDAWPFKEPVDARDVPDYYDIIKDPIDLKTMTKRVESEQYYVTFEMFVADVKRMFQNARTYNSP* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0596 538 MobiDBLite consensus disorder prediction 1 35 - -
Amo06g0596 538 CDD NAT_SF 265 319 - -
Amo06g0596 538 Pfam Bromodomain 465 538 IPR001487 GO:0005515
Amo06g0596 538 MobiDBLite consensus disorder prediction 1 134 - -
Amo06g0596 538 PANTHER BNAC04G26160D PROTEIN 1 538 - -
Amo06g0596 538 ProSitePatterns Bromodomain signature. 477 535 IPR018359 -
Amo06g0596 538 SUPERFAMILY Bromodomain 447 538 IPR036427 GO:0005515
Amo06g0596 538 MobiDBLite consensus disorder prediction 80 99 - -
Amo06g0596 538 Gene3D - 230 379 - -
Amo06g0596 538 PANTHER GH11602P 1 538 IPR037800 GO:0004402
Amo06g0596 538 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 239 372 IPR016181 -
Amo06g0596 538 MobiDBLite consensus disorder prediction 56 71 - -
Amo06g0596 538 PRINTS Bromodomain signature 489 505 IPR001487 GO:0005515
Amo06g0596 538 PRINTS Bromodomain signature 475 488 IPR001487 GO:0005515
Amo06g0596 538 PRINTS Bromodomain signature 524 538 IPR001487 GO:0005515
Amo06g0596 538 ProSiteProfiles Bromodomain profile. 472 538 IPR001487 GO:0005515
Amo06g0596 538 Pfam Acetyltransferase (GNAT) family 265 343 IPR000182 GO:0016407
Amo06g0596 538 Gene3D - 439 538 IPR036427 GO:0005515
Amo06g0596 538 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 226 372 IPR000182 GO:0016407
Amo06g0596 538 SMART bromo_6 453 538 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0596 Amo-Chr6 8570063 8576679 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Amo06g0596 Acetyltransf_1 1.7e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0596 K06062 - gmx:100791610 795.808