Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0581 ATGCCTTTACATGAAAGAGGTTTCTTTAAAAGTTCTTGTTCTTACTTTCAGCATGAGTTGAAAATTCCTAAAGTTTTTGTGAAAGAATATTGGAGAGGAGTATCAAATCCTATAGTGTTAAAGCTACCAAATAATCTTGAACAAAGAGTACATTGGATTCAAAAGAATGAAGATGAAGTTTGGTTGGAACAAGGTTGGGAACAAGTTGTGGAGGATTTTGGCTTAAAACATTCTCAATTCTTGACTTTTGACTATAAAGGACGATATGTTGCTGGTTTCTCTGATGCACTCAATGGAGGCTATGAGTCTTGGGGGCCTTTATTTGGCAAAGTTTTCTTTGCATTTTGGGTTATTTTTTATCTGTATCCAATTATCCATTCCTCAAAGGTCTCATGGGTCGCCAGAACAGAACACCAACCATTGTTATACTTTGTCAAGATATCAGAGCAATATTATTCAAGTAAAGAAAATATTTTTGAATCACACATGATCACATCAAAATCATTGCAGCTGTTAGATATCACAGTTTAA 531 0.3427 MPLHERGFFKSSCSYFQHELKIPKVFVKEYWRGVSNPIVLKLPNNLEQRVHWIQKNEDEVWLEQGWEQVVEDFGLKHSQFLTFDYKGRYVAGFSDALNGGYESWGPLFGKVFFAFWVIFYLYPIIHSSKVSWVARTEHQPLLYFVKISEQYYSSKENIFESHMITSKSLQLLDITV* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0581 176 SUPERFAMILY DNA-binding pseudobarrel domain 8 88 IPR015300 -
Amo06g0581 176 Pfam B3 DNA binding domain 14 88 IPR003340 GO:0003677
Amo06g0581 176 PANTHER B3 DOMAIN-CONTAINING 8 87 - -
Amo06g0581 176 Gene3D - 3 94 IPR015300 -
Amo06g0581 176 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 87 - -
Amo06g0581 176 Pfam Cellulose synthase 90 126 IPR005150 GO:0016020|GO:0016760|GO:0030244
Amo06g0581 176 SMART B3_2 8 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0581 Amo-Chr6 8407478 8416112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0581 90 125 Glycosyltransferase AT4G18780 83.333 3.95e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo06g0581 B3 3.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0581 K10999 - ahf:112718388 159.073