Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0561 ATGGCGAATCGGGTGGTGAAGGTGAAGAGGGAGACGATTGCGGCATGCATGACTTGCCCCCTCTGCAACAAGCTCTTCAGAGAAGCCACCACCATATCCGAATGCCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATCACAGATGAGGAATTAGAGTGCTGTCCAATATGCAACATTGACTTGGGTTGTGTTCCACTCGAAAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGACAAAGACACCTGAACCTGCTGCCCCCTCGGTACCGTTACCAGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCAAGGGTATCTGCACAAGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTGGTAGTCTGCGATCCTCTAGTTTTTCCATCGAAAAGTCCATTAAAAAGGAGGAAGAAGTACTAGAAGATCATCCTGGGAGTTCAAGTTCACCGGACACTTCAAATAAGTTTGCTGAAGATACTCGACAGAGTTCATCCCCTCGTGAAGGCAGTCAACCCTTACCAAATAAAGGAACAGAGAATGGTGCCGAATCATGGGATGCAAAATTGGATCTTTGGAAACCCTTGAATTGTTTAGTAGAAGTTGCAAGTAGGAGCAAATCTTTCAAGTCTAATGCACAAGGGTCTGATGCTAAACCAGAAACCATTCAAGTAAATGAGACTGATTCTCAAGTGCTAAAAACCAAAAATAAGGAAAATAAACGCAAGGGGAAGACTGAGGATGAAAAGACTAGCAGTTGTCCTGTCTCTTCTGATACAGTGAAACCCAATAAATCGCGTAGAGTTCGGCGTAGAAAGGAACCCCCTTTTGGGGAATCAGGCATATTACCCCAAGCTGTGCTGGATTCTAACAGCAGTAAACACTTAAGGAGTTGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAGAACCAGGAAGGAGACGCACCCTTGCCTCAAATTCCTTCAAGTTATGTGAGAATAAAGGATGGAAGCATACCTGTCTCATTTATCCAAAAATACTTAGTGAAGAAACTAGAGCTGACCAGTGAAGCAGAGATTGAGATTAAATGTATGGGGCAACCAGTGCTCCCTACACTGCGGCTACAAAATTTGGTTGAGTTGTGGCTGGATTCAGCCGCCACGTCACAGCGGATTCCAGCAACCATTGGGTCATCAGCAAAGGATTTTGTGATGGTCCTGGCCTATGCTCGGAAGGTCCCACATCCTTGA 1293 0.4493 MANRVVKVKRETIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVTKTPEPAAPSVPLPARRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKAGSLRSSSFSIEKSIKKEEEVLEDHPGSSSSPDTSNKFAEDTRQSSSPREGSQPLPNKGTENGAESWDAKLDLWKPLNCLVEVASRSKSFKSNAQGSDAKPETIQVNETDSQVLKTKNKENKRKGKTEDEKTSSCPVSSDTVKPNKSRRVRRRKEPPFGESGILPQAVLDSNSSKHLRSCPIWFSLVASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKYLVKKLELTSEAEIEIKCMGQPVLPTLRLQNLVELWLDSAATSQRIPATIGSSAKDFVMVLAYARKVPHP* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0561 430 MobiDBLite consensus disorder prediction 89 204 - -
Amo06g0561 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 - -
Amo06g0561 430 SUPERFAMILY RING/U-box 14 83 - -
Amo06g0561 430 SMART ring_2 19 59 IPR001841 -
Amo06g0561 430 MobiDBLite consensus disorder prediction 167 200 - -
Amo06g0561 430 MobiDBLite consensus disorder prediction 229 301 - -
Amo06g0561 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Amo06g0561 430 MobiDBLite consensus disorder prediction 229 252 - -
Amo06g0561 430 MobiDBLite consensus disorder prediction 253 273 - -
Amo06g0561 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 103 IPR013083 -
Amo06g0561 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Amo06g0561 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Amo06g0561 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 IPR044807 GO:0004842
Amo06g0561 430 MobiDBLite consensus disorder prediction 114 150 - -
Amo06g0561 430 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0561 Amo-Chr6 8288912 8295031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0561 2 349 C3H Transcription Factor Family AT2G30580 53.561 2.02e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0561 K16277 - gmx:100793731 687.952