Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo06g0561 | ATGGCGAATCGGGTGGTGAAGGTGAAGAGGGAGACGATTGCGGCATGCATGACTTGCCCCCTCTGCAACAAGCTCTTCAGAGAAGCCACCACCATATCCGAATGCCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATCACAGATGAGGAATTAGAGTGCTGTCCAATATGCAACATTGACTTGGGTTGTGTTCCACTCGAAAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGACAAAGACACCTGAACCTGCTGCCCCCTCGGTACCGTTACCAGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCAAGGGTATCTGCACAAGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTGGTAGTCTGCGATCCTCTAGTTTTTCCATCGAAAAGTCCATTAAAAAGGAGGAAGAAGTACTAGAAGATCATCCTGGGAGTTCAAGTTCACCGGACACTTCAAATAAGTTTGCTGAAGATACTCGACAGAGTTCATCCCCTCGTGAAGGCAGTCAACCCTTACCAAATAAAGGAACAGAGAATGGTGCCGAATCATGGGATGCAAAATTGGATCTTTGGAAACCCTTGAATTGTTTAGTAGAAGTTGCAAGTAGGAGCAAATCTTTCAAGTCTAATGCACAAGGGTCTGATGCTAAACCAGAAACCATTCAAGTAAATGAGACTGATTCTCAAGTGCTAAAAACCAAAAATAAGGAAAATAAACGCAAGGGGAAGACTGAGGATGAAAAGACTAGCAGTTGTCCTGTCTCTTCTGATACAGTGAAACCCAATAAATCGCGTAGAGTTCGGCGTAGAAAGGAACCCCCTTTTGGGGAATCAGGCATATTACCCCAAGCTGTGCTGGATTCTAACAGCAGTAAACACTTAAGGAGTTGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAGAACCAGGAAGGAGACGCACCCTTGCCTCAAATTCCTTCAAGTTATGTGAGAATAAAGGATGGAAGCATACCTGTCTCATTTATCCAAAAATACTTAGTGAAGAAACTAGAGCTGACCAGTGAAGCAGAGATTGAGATTAAATGTATGGGGCAACCAGTGCTCCCTACACTGCGGCTACAAAATTTGGTTGAGTTGTGGCTGGATTCAGCCGCCACGTCACAGCGGATTCCAGCAACCATTGGGTCATCAGCAAAGGATTTTGTGATGGTCCTGGCCTATGCTCGGAAGGTCCCACATCCTTGA | 1293 | 0.4493 | MANRVVKVKRETIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVTKTPEPAAPSVPLPARRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKAGSLRSSSFSIEKSIKKEEEVLEDHPGSSSSPDTSNKFAEDTRQSSSPREGSQPLPNKGTENGAESWDAKLDLWKPLNCLVEVASRSKSFKSNAQGSDAKPETIQVNETDSQVLKTKNKENKRKGKTEDEKTSSCPVSSDTVKPNKSRRVRRRKEPPFGESGILPQAVLDSNSSKHLRSCPIWFSLVASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKYLVKKLELTSEAEIEIKCMGQPVLPTLRLQNLVELWLDSAATSQRIPATIGSSAKDFVMVLAYARKVPHP* | 431 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo06g0561 | 430 | MobiDBLite | consensus disorder prediction | 89 | 204 | - | - | |
Amo06g0561 | 430 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 3 | 426 | - | - | |
Amo06g0561 | 430 | SUPERFAMILY | RING/U-box | 14 | 83 | - | - | |
Amo06g0561 | 430 | SMART | ring_2 | 19 | 59 | IPR001841 | - | |
Amo06g0561 | 430 | MobiDBLite | consensus disorder prediction | 167 | 200 | - | - | |
Amo06g0561 | 430 | MobiDBLite | consensus disorder prediction | 229 | 301 | - | - | |
Amo06g0561 | 430 | ProSitePatterns | Zinc finger RING-type signature. | 35 | 44 | IPR017907 | - | |
Amo06g0561 | 430 | MobiDBLite | consensus disorder prediction | 229 | 252 | - | - | |
Amo06g0561 | 430 | MobiDBLite | consensus disorder prediction | 253 | 273 | - | - | |
Amo06g0561 | 430 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 103 | IPR013083 | - | |
Amo06g0561 | 430 | ProSiteProfiles | Zinc finger RING-type profile. | 19 | 60 | IPR001841 | - | |
Amo06g0561 | 430 | Pfam | Zinc finger, C3HC4 type (RING finger) | 19 | 59 | - | - | |
Amo06g0561 | 430 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 3 | 426 | IPR044807 | GO:0004842 | |
Amo06g0561 | 430 | MobiDBLite | consensus disorder prediction | 114 | 150 | - | - | |
Amo06g0561 | 430 | MobiDBLite | consensus disorder prediction | 151 | 166 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo06g0561 | Amo-Chr6 | 8288912 | 8295031 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo06g0561 | 2 | 349 | C3H Transcription Factor Family | AT2G30580 | 53.561 | 2.02e-110 | 327 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo06g0561 | K16277 | - | gmx:100793731 | 687.952 |