Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0560 ATGGCAATCAGCACAAGATGGACCAACCATGTTTTCTTGAGTTTCAGAGGTGATGACACCAGAAAAGGCTTCACAGACCACCTTTTTGCTTCCCTTGAAAGAAGGGGTATCAAGACTTTTAAGGATGATCATGACCTTGATAAGGGAGGATCCATATCTGTGGAGCTCTTCAAGGCCATTGAAGAGTCCATGTTTGCACTCATCATCCTCTCACCAAACTATGCTTCCTCAACTTGGTGCTTAGATGAGCTCCAAAAGATTCTTCACTGCAGGAGCAATCTTGGCCAAGCTGTTTTTCCCATCTTCTATGGTGTTGATCCCTCTGATGTGAGGTATCAAAGAGAAACCTTTGGTGAAGCCTTCAGAAAACATGAAGAGAGATTCAGAGAAGACAAGGACAAAGTGAAGAGATGGAGAGATGCCTTGAAAGAAGTTGCAAGTTTCTCTGGTTGGGACTCTAAGGATCAACATGAAGCAGGACTAGTTGAAACAATTGTTGATCACATACAGAAAATGCTGATTCCGAAGCTGCCAACTTGCACAGATAACCTTGTTGGGGTTGATTCAAGGATAAAGAGGGTGATTTCACTCATAGGCATGAGGTTGGATGATGTTCGCTTTGTTGGCATATGGGGCATGGGTGGCATAGGTAAGACTACAACTGCTAGATTAGTCTATGAATCAATCAAAGAGGAATTCCAAGTTAGTTGCTTTCTTCAGAACATTAGAGAGATGCATGAGAAAAATGGCTTAGTTCAAATCCAAAAGGAACTTCTTTCTCATCTTAATGTAAGAAGCAGCAATTTTCATAATTTTTTTGATGGGAAAAAAATAATAGCAAACTCTTTGCGCAATAAAAAGGTTCTTCTTGTTCTTGATGATGTAAGTGAATTAAGTCAATTGGAGAATTTAGCAGAGAAGCAAGAGTGGTTTGGTTCAGGTAGTAAAGTGATAATCACAACCAGAGACAAACACATTCTGGCAACACATGGAGTGCTAAAAACTTGTGAGATTGGTGGCTTATTCTCAAATGAAGCTCTTCATCTCCTCTCTTTGAAAGCCTTCAAACAAGATGAACCGAAAGAAGGGTATTTGGATTTGTGCAAAGAAGTGGTTGAATACACTAAAGGCCTTCCACTAGCAATTGAAGTTCTAGGTTCCCATCTTCATGGAAGAACTATAGAAGTTTGGCATAGTGCTTTGAAGCAAATAAGAAGTTTTCCACTTCCTGAGATCCAAAATACACTTAAAGTAAGTTATGATGGTTTAAATAGCCCCGAGCAAGATATGTTTCTAGATATTGCCTGTTTTTTCAAGGGCATGGATAAAGAAGAAGTTACAGATATGTTAGAAACTTGTGGTGGTTGTCCTAAAATTGGAATTGAAATTTTGATTGAAAGAAATTTGATAACTATTGGTGCAACCAATAAGTTGCAGATGCATGATTTGATTCAAGAAATGGGAAGAAATATTGTATTCCTAGAATCTCCAAATGATCCAGGCAAACGTAGCAGGTTATGGTCTCAAGATGACATTGATCATGTATTGACAAATAATAAGGGGACTGAAGCCATTCAAGCTATAGTTCTAGACATAGTTCAACCATATGAAGCATGCTGGAGCACTGAAGCCTTCTCCAATACCAATCAAGTAAGATTACTCAAGTTATGTGAGATGCAACTTCCTCTTGGCCTCAATTGCCTTCCTTGTTCACTCAAAGTTCTTCATTGGGAAGGATCTCCTTTGAAAACTCTACCATTTAGTAATCAACTGAATGAGCTTGTTGACCTCAATTTGTCTCATAGCAAAATTGAACAACTTTGGCATGGAAAAAAGATTCTTAAAAAGCTAAGGTTTATCAATTTGAGTTTCTCCAAGAACCTAAAGAAAACCCTTGACTTTGATGGGGTTCCAAATCTTGAATCATTGGTTCTTGAAGGTTGTACAAGTTTAACGGAAATTCATACGTCCCTTGTACATCACAAGAAACTTGTTCTATTGAATTTGAAAGACTGCAAAAGGCTCAAAGCTTTTCCAAGTAAATTGGAGATGTGTTCATTGAAAGATTTAAATCTCTCTGGTTGCTCAGAACTGAAAATACTTCCCGAGTTTGGCGAAAACATGGAACTTCTCTCAATGCTTTCTTTAGAGGGAACTGCTATAACAAAGCTACCATCATCAGTGGGAAGTCTAGTTGGCCTTACTCAATTGAAGTTAAACAATTGCAAGAATCTTGTTTGCCTTCCAGACACCATTCATAAACTGAAGTCTCTCAAGATTTTGAATGTTTCCGGATGCTCAAAAATTCGCAGCTTGCCGGAGTGCCTTAAGGAAATAAAGTGTTTGGAGGAACTATGTGCAAGTGAAACAGCAATAGAAGAACTCCCTTCATGTGTCTTTTATCTAGAAAGCCTCAGGGTAATCTCATTTGCTGGTTGCAAGGGGCAAGTATCTAATTCAATGGAGATGTTTCTCCCTTTTAAGTGGTTGTTTGGAAGTCAACAAGCTCCAACTGGATTTCGCTTGCCACCTTCAGTCTCCCGCTTATGCCTTTTGAGCAGTGTAGATTTAAGTTACTGCAATTTATCTGATGAATCAATACCAGATGACTTTTGCCATTTATCTTCATTGAGGATTCTAGATCTCTCTGGGAATGACTTTGTTAGCATGCCTAGCAGCATATCGAAACTTCCAAAGCTTGAGTATCTTGATATAAATTGGTGCAAAAAGCTTGAATCATTGCCAGAGCTTCCATCAAGCATAAAAGAATTGGATGCAAGCAATTGTGCCTCACTTGAAGCTTCCAAATTGAATCTATCCAAGCCATGCAACCTCTTTGCATCACCTATACAATGCCACCTTCCTATACAAGAAATTATCAATCGCCTTTTTGAGGGACTTAGCATTCCAAAAGCAAGATTTGACATGCTTATAACTGGGAGTGAAATTCCATCATGGTTTGTCCCTCAAAGATGTATTTCCTTTGCAAAGATAGCAATCCCTCAAAATTGTCCTGTAAATGATTGGGTGGGATTTGCTCTGTGTTTCATGTTGGTAAGTTATGCAGATCCACCTCAAGTGTGCAATCATGAAGTTGAATGTTATTTGTTTGGGCCTAAGGGTAAGATGTTCATCAACTCCAGGAATTTACCTCTTATGGAGCCATATTGCCCTCACCTTTATATTCTTTATCTGTCCATTGATAAATTTCGTCACACAATTTATGAAGGTGGTCACTTCAAAGAAATTGAATTTGTATTGAAAAGTTATTGCTGCCATTCATTACAAATAGTGAGGTGTGGGTCTCGATTGGTGTGCAAGCAAGATGTTGAAGATATTTTTGGAAATCATTCCTAG 3357 0.3855 MAISTRWTNHVFLSFRGDDTRKGFTDHLFASLERRGIKTFKDDHDLDKGGSISVELFKAIEESMFALIILSPNYASSTWCLDELQKILHCRSNLGQAVFPIFYGVDPSDVRYQRETFGEAFRKHEERFREDKDKVKRWRDALKEVASFSGWDSKDQHEAGLVETIVDHIQKMLIPKLPTCTDNLVGVDSRIKRVISLIGMRLDDVRFVGIWGMGGIGKTTTARLVYESIKEEFQVSCFLQNIREMHEKNGLVQIQKELLSHLNVRSSNFHNFFDGKKIIANSLRNKKVLLVLDDVSELSQLENLAEKQEWFGSGSKVIITTRDKHILATHGVLKTCEIGGLFSNEALHLLSLKAFKQDEPKEGYLDLCKEVVEYTKGLPLAIEVLGSHLHGRTIEVWHSALKQIRSFPLPEIQNTLKVSYDGLNSPEQDMFLDIACFFKGMDKEEVTDMLETCGGCPKIGIEILIERNLITIGATNKLQMHDLIQEMGRNIVFLESPNDPGKRSRLWSQDDIDHVLTNNKGTEAIQAIVLDIVQPYEACWSTEAFSNTNQVRLLKLCEMQLPLGLNCLPCSLKVLHWEGSPLKTLPFSNQLNELVDLNLSHSKIEQLWHGKKILKKLRFINLSFSKNLKKTLDFDGVPNLESLVLEGCTSLTEIHTSLVHHKKLVLLNLKDCKRLKAFPSKLEMCSLKDLNLSGCSELKILPEFGENMELLSMLSLEGTAITKLPSSVGSLVGLTQLKLNNCKNLVCLPDTIHKLKSLKILNVSGCSKIRSLPECLKEIKCLEELCASETAIEELPSCVFYLESLRVISFAGCKGQVSNSMEMFLPFKWLFGSQQAPTGFRLPPSVSRLCLLSSVDLSYCNLSDESIPDDFCHLSSLRILDLSGNDFVSMPSSISKLPKLEYLDINWCKKLESLPELPSSIKELDASNCASLEASKLNLSKPCNLFASPIQCHLPIQEIINRLFEGLSIPKARFDMLITGSEIPSWFVPQRCISFAKIAIPQNCPVNDWVGFALCFMLVSYADPPQVCNHEVECYLFGPKGKMFINSRNLPLMEPYCPHLYILYLSIDKFRHTIYEGGHFKEIEFVLKSYCCHSLQIVRCGSRLVCKQDVEDIFGNHS* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0560 1118 Pfam TIR domain 10 184 IPR000157 GO:0007165
Amo06g0560 1118 Pfam NB-ARC domain 202 421 IPR002182 GO:0043531
Amo06g0560 1118 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Amo06g0560 1118 Gene3D - 3 172 IPR035897 -
Amo06g0560 1118 Gene3D - 173 334 IPR027417 -
Amo06g0560 1118 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 966 IPR044974 GO:0006952
Amo06g0560 1118 Pfam Leucine Rich Repeat 594 612 IPR011713 -
Amo06g0560 1118 SUPERFAMILY "Winged helix" DNA-binding domain 411 516 IPR036390 -
Amo06g0560 1118 Gene3D - 341 424 IPR042197 -
Amo06g0560 1118 SMART LRR_typ_2 874 897 IPR003591 -
Amo06g0560 1118 SMART LRR_typ_2 849 873 IPR003591 -
Amo06g0560 1118 SMART LRR_typ_2 708 731 IPR003591 -
Amo06g0560 1118 SMART LRR_typ_2 591 616 IPR003591 -
Amo06g0560 1118 Gene3D Ribonuclease Inhibitor 830 948 IPR032675 -
Amo06g0560 1118 Gene3D Ribonuclease Inhibitor 539 683 IPR032675 -
Amo06g0560 1118 Gene3D Ribonuclease Inhibitor 684 825 IPR032675 -
Amo06g0560 1118 ProSiteProfiles TIR domain profile. 7 173 IPR000157 GO:0007165
Amo06g0560 1118 Pfam C-JID domain 979 1111 IPR045344 -
Amo06g0560 1118 PANTHER - 12 966 - -
Amo06g0560 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 434 IPR027417 -
Amo06g0560 1118 SMART till_3 8 148 IPR000157 GO:0007165
Amo06g0560 1118 SUPERFAMILY L domain-like 528 932 - -
Amo06g0560 1118 PRINTS Disease resistance protein signature 207 222 - -
Amo06g0560 1118 PRINTS Disease resistance protein signature 375 389 - -
Amo06g0560 1118 PRINTS Disease resistance protein signature 753 769 - -
Amo06g0560 1118 PRINTS Disease resistance protein signature 282 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0560 Amo-Chr6 8283628 8288443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0560 16 810 WRKY Transcription Factor Family AT4G12020 33.741 3.07e-118 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0560 - - gmx:100815486 1585.47