Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0559 ATGGAGGAAGTTGAAGAAGCTAACAGAGCTGCTGTTGAGAGCTGCCATAGAGTTTTAACAGTGTTGTCTCAGCCTCAGGATCAAGTTCATTATAGGAATTTAATGGTAGAAACTGGTGAAGCTGTGATGAAGTTCAAGAAAGTTGTTTCCTTGCTTAGTAATAGTTTGGGTCATGCAAGAGTTAGGAAGCATAAGAAGCTTCAAGTACCATTTTCTCAAAGCATCCTCTTGGATAGCCCAGTTTGCATAAGAAAAAATCATCAATCTAAGTACTTGAAATTTCCTCAGGCTGATTTTCATGATAATTCAGCTCAGGAACTGGGTTTAACAGTAGGGAAATCGCTAAGTCTGGTTGCGAAACCGGCCTTGGAATTGAGCTCCAATGGCAATGGGAATGGGAAGAGTCCTCTTCAACTTGCTCAACAACTCTCATCAACACACTATCATATTCTTCAGCAGCAGCAGCAACAACAAAGGGCATTGCTGCTGCATCATCAGCAGCAGCAGCAACAAATGAAACATCAAGCCGAAATTATGTACAGAAGGAACAACATTAACAATAGCAATAACTGCAGCAGCAACAACAACAGTGTCATAAATCTGAATTTTGATAATAGCTCTAGCTGCACACCAACAATGTCGTCTACTAGGTCTTTTATTTCTTCCCTTAGCATAGACGGGAGCGTGGCGAACGTGGAAGGAAGCGCCTTCCATCTAATCGGAGCTGCGCGCTCTTCTGATCAGAATTCCCAACAGCACAAGAGAAAATGTTCTGCTAGAGGCGACGAGGCGAGCGGTGGCAAATGCCATTGCTCAAAGAAGAGGTTTAGATTCCCTTATTCAGCATTTTTGAATATGTCCCTCCAAAGATTTAAGTTTCATTTTGACATTACCATTTGCATCATTCTCCACAGGAAACATAGAGTGAAGAGATCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTCCTGATGATTATTCGTGGAGGAAGTACGGGCAGAAGCCCATCAAGGGGTCTCCACACCCCAGGGGTTATTATAAGTGCAGCAGCATGAGAGGGTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTTCAATGCTAATAGTTACCTATGAAGGGGAGCACAACCACCCTAAATTATCAACACAATCTGCAAACGCATGA 1185 0.4338 MEEVEEANRAAVESCHRVLTVLSQPQDQVHYRNLMVETGEAVMKFKKVVSLLSNSLGHARVRKHKKLQVPFSQSILLDSPVCIRKNHQSKYLKFPQADFHDNSAQELGLTVGKSLSLVAKPALELSSNGNGNGKSPLQLAQQLSSTHYHILQQQQQQQRALLLHHQQQQQQMKHQAEIMYRRNNINNSNNCSSNNNSVINLNFDNSSSCTPTMSSTRSFISSLSIDGSVANVEGSAFHLIGAARSSDQNSQQHKRKCSARGDEASGGKCHCSKKRFRFPYSAFLNMSLQRFKFHFDITICIILHRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPKLSTQSANA* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0559 394 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 300 393 IPR044810 GO:0003700
Amo06g0559 394 MobiDBLite consensus disorder prediction 249 264 - -
Amo06g0559 394 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 277 IPR044810 GO:0003700
Amo06g0559 394 ProSiteProfiles WRKY domain profile. 321 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g0559 394 MobiDBLite consensus disorder prediction 244 264 - -
Amo06g0559 394 Pfam Plant zinc cluster domain 305 324 IPR018872 -
Amo06g0559 394 Gene3D WRKY domain 312 386 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g0559 394 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 277 - -
Amo06g0559 394 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 300 393 - -
Amo06g0559 394 SMART WRKY_cls 326 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g0559 394 Pfam WRKY DNA -binding domain 328 385 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g0559 394 SUPERFAMILY WRKY DNA-binding domain 324 386 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0559 Amo-Chr6 8265135 8267900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0559 1 391 WRKY Transcription Factor Family AT2G30590 51.402 6.51e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo06g0559 WRKY 4.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0559 - - gmx:100170681 468.003