Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0553 ATGCCTCCTCCGTTTGATTCTATCTCTAAGATCCACCCTCCAAGGGAGGCATGGAGACTCAAAGTTAGGGTATTAAGAACTTGGATTGTTCCTTCTTTTGGAAATCATGAAGTTGCAAATTCAATGGAAATTGTTCTTGTTGATGGAGATTCTAACAAAATACAAGCAACTGTTAAGAAGCAGCTCATAAATAGGTTTAAAGAGAGTATTATTGAGGGTCAAACATACCGAATGTCATATTTTAGTGTTGTTCCAAACCAAGGCAATTATAGGGCAGCAGAACATGAGTTTAAGTTGGTTTTTCTTAACCATACAACTGTTATTCCTGTCCCTGACGATGATATCCCAAAGACATGTTTCAGTTTCTGTCCCTTTGATGAGCTCTTGAAAATGACTGAAGATTATGTTTACTTAGTTGATGTTATTAGTTTGCTGACTTCTGTTGGTGAAGAGAAAGAGTATGTGAAAGATGCGAAAGTGATGAAGATGATTGTTCTTGAGTTGACAATACGCTGTGCTCTGTTTGGCGAGTATGTGGATGAAGTGCATCGTTTCTTAGGTTCTGGCTATATGGAGCAGTCAGTTGTTGTGATCCAACTTGCCAAAGTTAAATTCTTTAGGGGACAAGTTGGTCTCCAAAATATTATGCATGCTACTCGGCTGTTCTTTAATCCAGATTTGTCTGAAGTAGTTGATTTTAAAAACAGTATGATTGACCAAGGTATCAATGGAACACAGCCATTGTTTATTGCTAATGAGGGCAAGGGTGTTTCATTGGAAGATGATTTTATGCGGCTTACTAGAAGATGCACTATTGACGAACTCCATGATAAGGAGGAGGGGTCTTTTGTGGTTTTTGGTTTTGTGAGATCTATTGTGGATGAGGGACCTTGGTGGTATTCAGCTTGTGTTTGTGGGAAGTCAATTCAGCCTCAATGTGGTGCATATTATTGTGATTTTTGTCAGCACTATGTTACCAATGTGACTCCTAGGTACCTTGTGTTTATTCCTTTATCTGCTTACTTATTGAAAAAATCATGTGCTGATCTATTTGGAGAAGTTCAGAAGGATGCCAATGTATGGTTTATTCCCTTTTTTTTGTTTTCTTTTTTGTTGTTGAGTTTAATAGTGACTGAGATATGTTTCTGCCATGTTGTTTGTGGAGATAGTTATCCTGTGATGTTCCAGCAATTGGTGGGTAAAAAATTGCTCCTTAAGATAGATACCAAGAGTGTTGGTGCAGACAAGTATTTTGGAACTTTCCGTGTGAGAAGAGTTTGTGATGATGTTGCCATTATTTCTATGTTTGAGCTGCCTAACTATGATGCTGATGATGAGTGTACTCCATTGAAGGATGGTAGGTTGGGAAAGATCCCTTCAACTGGGGATGAACATATTGTTGACAAGAGAGAGCCCTTTGAGGTGTTGTATGAGGGTATCACTGCTGATGGGAATTGTTCAACTATGAAGACAAACTGCAAGCCTTTGATTGATTTTATTGCTGAAAAGGGTGCTGTAGTTCCTGGATTGGATGATATAAGTACTGAAATTGATATTCTAAGAGAGGCAGGGAAAAGTGTTGATGATAGTGTACTTGTTGATGGGGAGTGCAGTCTGGAAATTGAGGGTCTCTTGAATTCTCCTCCCGTGGAAACTACGGATGTACTTTCTGCTGTTCTTGATGGATCCCCTGTTCATGTGATCAAGAAAGAGAATGTTTCCAATGTTCCAAGGGGTAAAAAAGCTAAAAGAAATCTAAAAAAAATCATTTGA 1773 0.3852 MPPPFDSISKIHPPREAWRLKVRVLRTWIVPSFGNHEVANSMEIVLVDGDSNKIQATVKKQLINRFKESIIEGQTYRMSYFSVVPNQGNYRAAEHEFKLVFLNHTTVIPVPDDDIPKTCFSFCPFDELLKMTEDYVYLVDVISLLTSVGEEKEYVKDAKVMKMIVLELTIRCALFGEYVDEVHRFLGSGYMEQSVVVIQLAKVKFFRGQVGLQNIMHATRLFFNPDLSEVVDFKNSMIDQGINGTQPLFIANEGKGVSLEDDFMRLTRRCTIDELHDKEEGSFVVFGFVRSIVDEGPWWYSACVCGKSIQPQCGAYYCDFCQHYVTNVTPRYLVFIPLSAYLLKKSCADLFGEVQKDANVWFIPFFLFSFLLLSLIVTEICFCHVVCGDSYPVMFQQLVGKKLLLKIDTKSVGADKYFGTFRVRRVCDDVAIISMFELPNYDADDECTPLKDGRLGKIPSTGDEHIVDKREPFEVLYEGITADGNCSTMKTNCKPLIDFIAEKGAVVPGLDDISTEIDILREAGKSVDDSVLVDGECSLEIEGLLNSPPVETTDVLSAVLDGSPVHVIKKENVSNVPRGKKAKRNLKKII* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0553 590 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 333 - -
Amo06g0553 590 Gene3D - 114 245 IPR012340 -
Amo06g0553 590 Gene3D - 4 113 IPR012340 -
Amo06g0553 590 Pfam Domain of unknown function DUF223 43 132 IPR003871 -
Amo06g0553 590 Gene3D - 260 437 IPR012340 -
Amo06g0553 590 CDD RPA1_DBD_B_like 140 238 - -
Amo06g0553 590 SUPERFAMILY Nucleic acid-binding proteins 267 336 IPR012340 -
Amo06g0553 590 CDD RPA1_DBD_A_like 19 107 - -
Amo06g0553 590 SUPERFAMILY Nucleic acid-binding proteins 120 237 IPR012340 -
Amo06g0553 590 PANTHER REPLICATION FACTOR A 1, RFA1 22 333 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo06g0553 590 SUPERFAMILY Nucleic acid-binding proteins 3 114 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0553 Amo-Chr6 8176176 8179411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0553 8 341 Core DNA Replication Machinery Family AT2G06510 23.120 8.00e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0553 - - aip:107647213 620.157