Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0548 ATGATTCCTCATCATCAAATATGTTTTTTTCAGATACTTGTTCACAACAAGTTTCACCAAAAGATGATGATTCCTAAATGTGCAAATGAATATTGGAAAAGAATGTCARACCCTATAAAGTTGGTGTTACCTTATGGTGTTGAGAAGAASGTGAATTGGACCAAAAGAGGAGAAAAGATTTRGTTGGAACAAGGTTGGRAAAAGGTTGTGGAATTGTGTRGTTTGAGTTATGAGTGGTTGTTGACTTTTGACYAYAATGRAAGGTCTCGTTTTGAAGTCAAAGTATATGATACCACTGCTTTAAGGGTAGCTTATTATGATGTTGTTGAGAATAACAAAGATATTGATGAAACTGAGAGCGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAGAATCTCAGCATGAATTTGTTCAAGAACACTTCAAGAGAAAGAAGACTAACACAGTTAATGGGAGAAATGGGAATCCCAGTTTCAAGATTCGAATTCAAGAATCATATGTTGGGTCAAGTTGCGTGGCAATACCAGCAACGTTTGCAAGGAAGCATTTGGAGGAAGGACCGATTCGTATGAATGTGGGTAACAGAACTTGGACTGTGTGCTACAAAACTTGGAGAGGAAGTGACAGATATCGCAAACACAAATTGCAAAGTGGGTGGCTCAGATTTAGAAGAGAGAACAATTTAGAGGTTGGTGATGTGTGTGTCTTTGAGTTAATTAGCAAATTTCCTCAAACAATGACCATGAGATTGCAGAGTGGATGA 783 0.3678 MIPHHQICFFQILVHNKFHQKMMIPKCANEYWKRMSXPIKLVLPYGVEKXVNWTKRGEKIXLEQGWXKVVELCXLSYEWLLTFDXNXRSRFEVKVYDTTALRVAYYDVVENNKDIDETESDDDDDDDDDDDDDDDDEESQHEFVQEHFKRKKTNTVNGRNGNPSFKIRIQESYVGSSCVAIPATFARKHLEEGPIRMNVGNRTWTVCYKTWRGSDRYRKHKLQSGWLRFRRENNLEVGDVCVFELISKFPQTMTMRLQSG* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0548 260 MobiDBLite consensus disorder prediction 114 141 - -
Amo06g0548 260 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 153 - -
Amo06g0548 260 Gene3D - 2 100 IPR015300 -
Amo06g0548 260 SMART B3_2 165 259 IPR003340 GO:0003677
Amo06g0548 260 SMART B3_2 9 99 IPR003340 GO:0003677
Amo06g0548 260 PANTHER B3 DOMAIN-CONTAINING 5 153 - -
Amo06g0548 260 SUPERFAMILY DNA-binding pseudobarrel domain 4 98 IPR015300 -
Amo06g0548 260 Pfam B3 DNA binding domain 166 252 IPR003340 GO:0003677
Amo06g0548 260 CDD B3_DNA 163 246 IPR003340 GO:0003677
Amo06g0548 260 Gene3D - 143 258 IPR015300 -
Amo06g0548 260 SUPERFAMILY DNA-binding pseudobarrel domain 160 253 IPR015300 -
Amo06g0548 260 MobiDBLite consensus disorder prediction 114 140 - -
Amo06g0548 260 ProSiteProfiles B3 DNA-binding domain profile. 164 260 IPR003340 GO:0003677
Amo06g0548 260 PANTHER B3 DOMAIN-CONTAINING 159 248 - -
Amo06g0548 260 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 159 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0548 Amo-Chr6 8145049 8147791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0548 121 246 REM Transcription Factor Family AT1G49480 30.282 2.54e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo06g0548 B3 5.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0548 - - adu:107493091 443.351