Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0539 ATGCATGTCACAAGTGTCATATTTTTTGTGGCTCCTGTGGATAGGCGAAGTAAACCAATTTATATGGACTTTTATGCTTTTCACTATGTTAAAGATATTGTTGATATATCTTTACTAAAACTAATTCAAGATGAGTTGGGATTGAACTACTTTGATGGACTGGATGATGTTTCATATGGTATAGAAGATAATGAGATGCATCAAAATATGAAAAGTTCTGGTGTGCAAATGATTCAAACGAACACTTCCAATGGAACTACTGTCAAGAAGAGGTCAATAACAAAAAAAAGAGGATGTGTTGCTGAACAGTATAGCAAGAGGTTAACGGAGTATGATATGAAGGCTGATCGTTTTTATATTCGCTATGAGTTTGCTAGATTATTGCTTAAGAGTGGTAGATCGGAACAATGGAAATTTACTGTTAAGGGCTCAAAGATTACTAAAACCTTTGCAATGCATGTCTTGAAAAGTAAGCGCAATAATCGAGAGTACAAAATTGGACCCAAATGGAAAGATTTTGTCAACATGCATAAACTTAGGCCTGGATATTTATGTGTATTTAGAAGTGTTTCGAACAAAAATCATTTGGTTCAGGTTTCTGTGGTTAGAAACTAA 615 0.3415 MHVTSVIFFVAPVDRRSKPIYMDFYAFHYVKDIVDISLLKLIQDELGLNYFDGLDDVSYGIEDNEMHQNMKSSGVQMIQTNTSNGTTVKKRSITKKRGCVAEQYSKRLTEYDMKADRFYIRYEFARLLLKSGRSEQWKFTVKGSKITKTFAMHVLKSKRNNREYKIGPKWKDFVNMHKLRPGYLCVFRSVSNKNHLVQVSVVRN* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0539 204 Gene3D - 78 204 IPR015300 -
Amo06g0539 204 SUPERFAMILY DNA-binding pseudobarrel domain 104 201 IPR015300 -
Amo06g0539 204 Pfam B3 DNA binding domain 108 197 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0539 Amo-Chr6 8031637 8034998 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo06g0539 B3 4.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0539 - - adu:107489370 350.132