Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0500 ATGGCTCCCAAACGCAAAAGTTTGAAGCGCAAACTCGAACATGATTTGGTTGCACTTGGATCAGATCGCGCCAAGTCTCCACAGCCGCTTCAAAATTCTCCTCCTCCTTCTTCTCGTGATTTCTCCGCTGTCATTCTTTCACATGTAGATCTCCTCAATTCCCCTTCATCCACATATGTGACTGACCGTGCTGCTCTTTTTAGATCGCTCCATGCTCTCTCCGATTTGGCCCAGAACGAGGAAATGGTTGATGATATGGTCAAGTGTGGTGTTGTACCCGCTGTGGTGAAGCATTTGGAGGTGCCGATTGACGATGATTGTGTTTGTGGACCGTATGGTTATGAGGTAGAGAAAAAGTGTGCAATAATTCTTGGCCTTCTTGCTAATAAGCCAGAACATCAACACCTGATTGTTGATGCTGGAGCCTTGCCGTATATTGTGGACTTGTTAAAGAGGCACAAAACTAGTAGCATTATTTCTCCTGGTCTCGTTGGTCTTCTTAGGAGATTAGCTGATGCAATAACTAATCTTGCACATGAAAATACCACCATAAAGAACCTTGTTAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAACTGCTTGAATTCAATGATAGAAACGTACAGAAGGCGGCTGCTGGCGCTCTGCGAACTCTTGCCTTCAAGAATGATGAGAATAAAAATCAGATTGTTGAATGCAAAGCATTACCAACTCTTGTGCTAATGCTCCGATCAGAGGATCCTACTGTACATTATGAGGCGGTTGGTGTAATAGGAAACCTTGTACACTCTTCGCCCAATATTAAGAAAGAAGTTATTCAAGCTGGGGCATTACAACCTGTGATTGGATTACTTAGTTCTAGCTGTTTGGAGAGTCAAAGAGAAGCGGCTCTTTTACTTGGTCAATTTGCTTCAACGGATACAGATTGCAAGGTTCATATTGCCCAAAGAGGGGCAATTCAGCCATTAGTTGGCATGCTTAAGTCATCAGATTCACAGCTTAAGGAGATGTCAGCTTTTGCTCTTGGGAGGTTGGCGCAGGATTCACACAATCAAGCTGGTATTGCTTATCATGGAGGTATTGAGCCTCTAATCGATCTTCTTAGCTCAAAGAATGCGTTCATCCAGCACAATGCAGCTTTTGCTCTATATGGCCTGGTGGATAATGAGGACATTATTGCAGACGTTATTAAGGCTGGTGGTTTTCACAAACTTCAGGATGGAAGTTTCAAAGCTCAACCAACTAGAGAGTGCGTAGCAAAAACCTTAACAAGATTTGAGGAGAAGATCCAGGGGCAAGTATTGAAACACTTGTTATATCTTATGCGCTTTGCGGAAAAGGGTGTTCAACGGCGTGTTGCTCTTGCTCTTGCTCATTTATGTCCTATTGATGATTGTAGAACTATCTTCATTGACAACAATGGATTAGAATTGCTGTTGGAGCTTCTTGGATCTACAAACCTTAAACAGACAGGTGTTGCTTCGCTGGCACTTCACAAGTTGGCTACCAGAGCCATTTCTGTCCCTCTTGGTGATGTTGCACCTTCATCGCCAACTCCCCAGGAATTTTTAGGCAAGCACTGTGTTAACAATCCAAAGCTCTCTGATGTCACATTCTTGGTTGAAGGCAAAAGATTCTATGCTCATCGAGTTTGCTTAGTCAAGTCAGATATATTTCGAGCAATGTTTGATGGTGGTTACAGGGAAAGGGAAGCCAAAGATATAGAGATTCCGAACATCAAATGGGATGTATTTGAATTGATGATGAGATATATATACACTGGAACAGCAGATGTTAGTCTGGATATCGCTCAGGATCTTCTCAAAGCTGCTGATCAGTATCTTCTTGAGGGTCTTAAGCGTCTCTGCGAAAATACCATTTCGCAGGATATTACTGCAGAAAATGTTGCACTAATGTACCAGATGTCAGATACTTTCAATGCAACTTCACTAAAACATGCATGCATAATGTTTGTGTTGGACCAATTTGATAAGCTGAGTTCCAAACCATGGTATGGCTACCTGGTTTGCAGCATTGTTCCAGACATACGCAAATTCTTCTCAACTTTACTCGGGAAGTTGATGGCTCCACAACTCTCCGGCAGTCACACCTTCTCTCTTTCTTCCTGGCGGTGGAGGCAGAGGAGGGAGATTGTTGGTGTGAAAGGCCATGATGGATATGGCAATGTCAATGTGAAAAGCAACAATGTATTTGATGGCTTCCAAGGAGATAATGATTATTGGAGTGATCTTGACAATGATCTTTATACTGGACACAGGCATTGCGTCCTGTGCAGTTTAAAAGAGAAGTTAAGTACCACAACAAAGACACTATAG 2337 0.4283 MAPKRKSLKRKLEHDLVALGSDRAKSPQPLQNSPPPSSRDFSAVILSHVDLLNSPSSTYVTDRAALFRSLHALSDLAQNEEMVDDMVKCGVVPAVVKHLEVPIDDDCVCGPYGYEVEKKCAIILGLLANKPEHQHLIVDAGALPYIVDLLKRHKTSSIISPGLVGLLRRLADAITNLAHENTTIKNLVRMEGGIPPLVELLEFNDRNVQKAAAGALRTLAFKNDENKNQIVECKALPTLVLMLRSEDPTVHYEAVGVIGNLVHSSPNIKKEVIQAGALQPVIGLLSSSCLESQREAALLLGQFASTDTDCKVHIAQRGAIQPLVGMLKSSDSQLKEMSAFALGRLAQDSHNQAGIAYHGGIEPLIDLLSSKNAFIQHNAAFALYGLVDNEDIIADVIKAGGFHKLQDGSFKAQPTRECVAKTLTRFEEKIQGQVLKHLLYLMRFAEKGVQRRVALALAHLCPIDDCRTIFIDNNGLELLLELLGSTNLKQTGVASLALHKLATRAISVPLGDVAPSSPTPQEFLGKHCVNNPKLSDVTFLVEGKRFYAHRVCLVKSDIFRAMFDGGYREREAKDIEIPNIKWDVFELMMRYIYTGTADVSLDIAQDLLKAADQYLLEGLKRLCENTISQDITAENVALMYQMSDTFNATSLKHACIMFVLDQFDKLSSKPWYGYLVCSIVPDIRKFFSTLLGKLMAPQLSGSHTFSLSSWRWRQRREIVGVKGHDGYGNVNVKSNNVFDGFQGDNDYWSDLDNDLYTGHRHCVLCSLKEKLSTTTKTL* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0500 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Amo06g0500 778 Pfam Armadillo/beta-catenin-like repeat 187 220 IPR000225 GO:0005515
Amo06g0500 778 Pfam Armadillo/beta-catenin-like repeat 266 301 IPR000225 GO:0005515
Amo06g0500 778 Pfam Armadillo/beta-catenin-like repeat 223 262 IPR000225 GO:0005515
Amo06g0500 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 318 360 IPR000225 GO:0005515
Amo06g0500 778 Pfam BTB/POZ domain 530 629 IPR000210 GO:0005515
Amo06g0500 778 ProSiteProfiles BTB domain profile. 535 601 IPR000210 GO:0005515
Amo06g0500 778 Gene3D Potassium Channel Kv1.1; Chain A 515 660 IPR011333 -
Amo06g0500 778 Gene3D - 411 509 IPR011989 -
Amo06g0500 778 SMART BTB_4 535 631 IPR000210 GO:0005515
Amo06g0500 778 Gene3D - 42 163 IPR011989 -
Amo06g0500 778 Gene3D - 291 409 IPR011989 -
Amo06g0500 778 Gene3D - 164 290 IPR011989 -
Amo06g0500 778 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 4 695 - -
Amo06g0500 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 192 227 IPR000225 GO:0005515
Amo06g0500 778 MobiDBLite consensus disorder prediction 18 38 - -
Amo06g0500 778 SUPERFAMILY POZ domain 527 628 IPR011333 -
Amo06g0500 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 141 171 IPR000225 GO:0005515
Amo06g0500 778 SMART arm_5 181 221 IPR000225 GO:0005515
Amo06g0500 778 SMART arm_5 79 129 IPR000225 GO:0005515
Amo06g0500 778 SMART arm_5 307 347 IPR000225 GO:0005515
Amo06g0500 778 SMART arm_5 463 503 IPR000225 GO:0005515
Amo06g0500 778 SMART arm_5 223 263 IPR000225 GO:0005515
Amo06g0500 778 SMART arm_5 265 305 IPR000225 GO:0005515
Amo06g0500 778 SMART arm_5 130 179 IPR000225 GO:0005515
Amo06g0500 778 SMART arm_5 348 388 IPR000225 GO:0005515
Amo06g0500 778 SUPERFAMILY ARM repeat 65 201 IPR016024 -
Amo06g0500 778 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 234 276 IPR000225 GO:0005515
Amo06g0500 778 SUPERFAMILY ARM repeat 169 502 IPR016024 -
Amo06g0500 778 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 695 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0500 Amo-Chr6 6995934 7001744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0500 285 496 U-box Gene Family AT2G23140 30.631 2.46e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo06g0500 BTB 3.1e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0500 - - sind:105165291 890.182