Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0493 ATGCCAAGCTGTAGCAGGGTTCAAAGCATGCTGCAGGCTGCGGTTCAATCACTTCACTGGACTTACACCATCTTTTGGCAACTCTCTCCACAACAAAGAGTTCTAAGGTGGAGTGATGGATTCTACAATGGAGAAATTAAGGTTAGGAGGACAGTAGAAGCAATAGAAGCTAACAAGAGTAATAGTAATAATGAGGAGGCGTCTCTCCAGAGAAGCAACCAGCTTAGAGACCTCTATGACTTACTATTGTCTGATCGCCAGGGAGACCTCATCTTTGCTGCTGATCCCCCGGCAACTCCGCGTCCTTGTACCGCCTTGTCGCCGGAGGATCTTAGCGAATCCGAATGGTACTATTTGATGTGTGTCTCCTTCTCCTTTGCTCCTGGTGTAGGGTTGCCGGGGAAGGCATATGCGAGGAGGCAGCATGTTTGGCTCCAAGGTGCAAACGAAGCGGACACCAAGACATTTTCAAGAGCAATTCTTGCCAAGAGTGCTGATGTGAAGACAGTGGTGTGCATTCCAATGTTGGATGGCGTCGTTGAACTCGGCACAACTGATAAGGTAAAAGAAGATATCAACTTAATCAAACATATAAAGAGCTTCTTCATAGGAGATCACCACCGTCCCCAACCAAAGCATGCCCTATCTGAAAACTCTGCCTCCAATCCCATTACAGAAGAAGCTCAATTATTATTGGATTCAGAAATAGCAACCCTCCCACAAAGCAAGCTTAAGGAGCTGGTCATGGCAGAGGACAGTAGCCGAGCCGGATCGCCGGATGATGGCTCCAATCGGCTGAACTCAGCCGGGTTATTGGAGTTGCTTCCACCAGAATCAGCAGCTTCACTAGAACTACTACATGGTGATGAGTATGATAATAACTCAGAGGCTGAGACATCTCACCTATGTACGGAGCAAGAGGGCCACACACACTACTCTAAAACGGTGTCCACCATCCTAGAAGGCAGCTCTGGCCACCGGCCGGATGCTGTTTGCGGCTTATTGTCCTTCCAATCAGCTTTTGCCACGTGGAGCAGCAGTGTTTATAACTGCAACCAGGTGACAGTGGTTGAAAACCCCCAACGGCTCCTCAAGAACATATTGTTTAGGGTTCCATACTTGCATCGCAAGCAAAACCGCCACAATTCAGCACAAACCCTAGAACAATTGGAAAGAACGATAATGCCTTCTCCACAAGATGACCTAATCAGCAGCCACGTGGCAGCGGAGCGGCGGCGTCGCGAAAAGCTGAACGAGAAGTTCATCACGTTAAGGTCGTTGGTACCATATGTGACGAAAATGGACAAGGCTTCTATATTAGGAGACACAATTGAGTACGTGAAACAGTTGCACGAGAAGGTGAAGAAGCTGGAGGAGGAAGATAAACGGCGGAGAAGTGGAAAGAAGAGGAAGGAGAGGGCGGTGGAGGTTTCGGTGATAGAGGGTGAGATTTTGTTGGAGGTGGAGTGTATGAATAGGGAAGGGTTGTTGCTTGATTTGATGAGAGCGTTGAAGGATGTGGGAATAGAGGTGAGAGGGGTAAAATCGTCATTTAAGGGTGATGATGAAAGGGTGTTTGTGGTGGAGTTAAGAGGCAAGGTGAAAGAAAATGGAAAAAGGAATAATAATAATAAGAAGAAGAAGATTAGCATCATGGAAGTGAAGAAGGTCCTTCGTAACATTATAAACCCTCATCATCCACTATAA 1707 0.471 MPSCSRVQSMLQAAVQSLHWTYTIFWQLSPQQRVLRWSDGFYNGEIKVRRTVEAIEANKSNSNNEEASLQRSNQLRDLYDLLLSDRQGDLIFAADPPATPRPCTALSPEDLSESEWYYLMCVSFSFAPGVGLPGKAYARRQHVWLQGANEADTKTFSRAILAKSADVKTVVCIPMLDGVVELGTTDKVKEDINLIKHIKSFFIGDHHRPQPKHALSENSASNPITEEAQLLLDSEIATLPQSKLKELVMAEDSSRAGSPDDGSNRLNSAGLLELLPPESAASLELLHGDEYDNNSEAETSHLCTEQEGHTHYSKTVSTILEGSSGHRPDAVCGLLSFQSAFATWSSSVYNCNQVTVVENPQRLLKNILFRVPYLHRKQNRHNSAQTLEQLERTIMPSPQDDLISSHVAAERRRREKLNEKFITLRSLVPYVTKMDKASILGDTIEYVKQLHEKVKKLEEEDKRRRSGKKRKERAVEVSVIEGEILLEVECMNREGLLLDLMRALKDVGIEVRGVKSSFKGDDERVFVVELRGKVKENGKRNNNNKKKKISIMEVKKVLRNIINPHHPL* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0493 568 ProSiteProfiles ACT domain profile. 485 562 IPR002912 -
Amo06g0493 568 Pfam Helix-loop-helix DNA-binding domain 405 451 IPR011598 GO:0046983
Amo06g0493 568 SMART finulus 407 456 IPR011598 GO:0046983
Amo06g0493 568 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 202 IPR025610 -
Amo06g0493 568 Coils Coil 440 460 - -
Amo06g0493 568 Coils Coil 52 72 - -
Amo06g0493 568 Gene3D - 403 474 IPR036638 GO:0046983
Amo06g0493 568 PANTHER TRANSCRIPTION FACTOR TT8 6 562 - -
Amo06g0493 568 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 401 450 IPR011598 GO:0046983
Amo06g0493 568 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 400 462 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0493 Amo-Chr6 6907471 6920330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0493 7 562 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 45.009 6.93e-147 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo06g0493 bHLH-MYC_N 3.8e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0493 - - aprc:113862120 463.381