Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0487 ATGAGCTACCACGCGAATAGTGAAGAGGGCCGAAGAGGTTGGAAAAGGAAGCCCCCGGGAATGGAACGTTGGGGGAGAGAACAGAGGCCGTACGATACAAACTCTAGACCTTACGATAGGAACATGGTTCCTCATGGTTGGTTAGGCTGCCCACCACATGGTCAAGAATTAGGATTCATAATACCATCAAAGGTCCCACTCGGTGAATCCTTCAACGATAACATCCTAGGTCAGAAATATACTCCCAAGCAAGCAATTCTTCAGCAACGAGCTTTAGGTAGAGAACTTGGTTTAGTGCTTGATCTGACAAATACTAACCGTTACTATCCAGTTTCAGATTGGACAAAAGAAGGGATTAGTCATGTTAAGATAAGATGCAAGGGAAGAGATTCTGTGCCTGATGATGAATCTGTAAAAAAATTTTGTGACGAGGTTCTGGACTTTTGCTCCCGAAGAACAAATACAATGAAATATATACTAGTACATTGCACACATGGGCATAACCGTACAGGTTATATGATTGTTCATTTTCTTGTGCGCACAGAATCCATTTCTGTGACTGAGGCAATAAATAGATTTGCTCAGGCSCGTTACCCAGGAATTTACAAGCAGGATTACATTGACGCCCTATATATGTTTTATWGTGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAGACTCCAGAATGGAAAAGACTTTGTGAGACAGATTTTGATGGTGCTGCTGTCCCAGCTGTAGACAACTATAGAGATGTGCCTCAGCAGGATGCTGTAGAAAATTATGGAAATGTTCCTCAGCAGGTGCATGCTGTAGAAAATCATGGAAATGTTCCTCAGCAGGAGAATACCATGAGGAATGAAGCATTGACTAATGACGATATTTTGGGAGATRCCATTCCTTCATATCAGCTGCATACAATGCAAGAAGTTTGTTATCAACTGCTCAAACTGGGCACAGGGGGGAGAGGACGTCCGCAGTTTCCTGGATCACACCCCGTTTCTTTGAACAGTGAAAATCTACAACTCTTAAGACAGCGGTATTACTATGCCACTTGGAAAGCTGATGGAACTCGTTACATGATGCTGATTACTTTTGATGGATGTTATCTGATCGACAGAAAGTTTCTCTTCCGAAAGATCAACATGCGGTTTCCTTGCAGATACTCAAATGGGGGTACACCTGAGAAGAATCACCACTATACATTACTTGACGGGGAGATGATTATCGACATGGATCCGCATACGCATAAGCAAGAGAGAAGATACCTCATTTATGATCTGATGGCAATTAATCAAGTCTCAGTGACAGAGCTTCCATTCTACGAACGGTGGAAATTGCTGGATAAAGAAGTAATTGAGCCTCGTAACATGGAACGAGAGGCTCTTTCCAAGAGTACAAATCCTTATTACAGATATGACTTGGAGCCATTTAGCGTGAGGAGGAAGGGGTTTTGGTTACTTTCTACCGTTTCAAAGCTCCTTCATAAATTTATTCCACAACTCTCGCATCAATCAGATGGTCTGGTGTTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACACGAAGGTCTTTTGAAGTGGAAATATCCCGAGATGAACTCCGTTGACTTCCTCTGTGAGGTTGGAGCAGGTGATCGCCCCCTCCTTTATCTGTTTGAACGCGGAAGGAAGAAGTTAATGGAAGGGAATAGAGTTATTTTTAAAGATGCATCAGATATTTCTTCCTATTCAGGGAAGATCATTGAGTGCTACTGGGACGCCACAGAGCGTCACTGGGTCTGTATGAGAATCAGATTTGACAAAGCAAATCCGAATGAGATTAATACCTACAGAAAGGTAATGCGAAGCATAAAGGATAACATTACKGAAGAGTTGCTGTTGAATGAGATCAATGGAATCATTAGCCTACCCTTATATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGAACACCGTCTTGTTGCGGCGCAGATAA 1983 0.4266 MSYHANSEEGRRGWKRKPPGMERWGREQRPYDTNSRPYDRNMVPHGWLGCPPHGQELGFIIPSKVPLGESFNDNILGQKYTPKQAILQQRALGRELGLVLDLTNTNRYYPVSDWTKEGISHVKIRCKGRDSVPDDESVKKFCDEVLDFCSRRTNTMKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINRFAQARYPGIYKQDYIDALYMFYXEKKPEDLVCPQTPEWKRLCETDFDGAAVPAVDNYRDVPQQDAVENYGNVPQQVHAVENHGNVPQQENTMRNEALTNDDILGDXIPSYQLHTMQEVCYQLLKLGTGGRGRPQFPGSHPVSLNSENLQLLRQRYYYATWKADGTRYMMLITFDGCYLIDRKFLFRKINMRFPCRYSNGGTPEKNHHYTLLDGEMIIDMDPHTHKQERRYLIYDLMAINQVSVTELPFYERWKLLDKEVIEPRNMEREALSKSTNPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHQSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGDRPLLYLFERGRKKLMEGNRVIFKDASDISSYSGKIIECYWDATERHWVCMRIRFDKANPNEINTYRKVMRSIKDNITEELLLNEINGIISLPLYADRIQRDIKAHQNTVLLRRR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0487 660 SUPERFAMILY Nucleic acid-binding proteins 532 644 IPR012340 -
Amo06g0487 660 MobiDBLite consensus disorder prediction 1 37 - -
Amo06g0487 660 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 139 197 IPR000387 GO:0016311|GO:0016791
Amo06g0487 660 PANTHER MRNA-CAPPING ENZYME 4 660 - -
Amo06g0487 660 PIRSF mRNA_capping_HCE 30 660 IPR017074 GO:0004484|GO:0006370|GO:0140818
Amo06g0487 660 PANTHER MRNA-CAPPING ENZYME-LIKE 4 660 - -
Amo06g0487 660 ProSitePatterns Tyrosine specific protein phosphatases active site. 161 171 IPR016130 GO:0016311|GO:0016791
Amo06g0487 660 MobiDBLite consensus disorder prediction 8 34 - -
Amo06g0487 660 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 297 530 - -
Amo06g0487 660 CDD Adenylation_mRNA_capping 303 530 IPR001339 GO:0004484|GO:0005524|GO:0006370
Amo06g0487 660 Pfam mRNA capping enzyme, C-terminal domain 560 627 IPR013846 -
Amo06g0487 660 Gene3D DNA ligase/mRNA capping enzyme 290 527 - -
Amo06g0487 660 Gene3D Protein tyrosine phosphatase superfamily 20 237 IPR029021 -
Amo06g0487 660 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 231 IPR029021 -
Amo06g0487 660 Pfam Dual specificity phosphatase, catalytic domain 94 214 IPR000340 GO:0008138|GO:0016311
Amo06g0487 660 Pfam mRNA capping enzyme, catalytic domain 331 529 IPR001339 GO:0004484|GO:0005524|GO:0006370
Amo06g0487 660 SMART dsp_5 40 216 IPR020422 GO:0006470|GO:0008138
Amo06g0487 660 ProSiteProfiles Dual specificity protein phosphatase domain profile. 65 220 IPR020422 GO:0006470|GO:0008138
Amo06g0487 660 CDD RNA_5'-triphosphatase 46 212 - -
Amo06g0487 660 Gene3D - 528 636 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0487 Amo-Chr6 6811218 6818060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0487 26 650 Protein tyrosine phosphatase (PTP) family AT3G09100 60.224 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0487 K13917 - gmx:100778292 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0015 16 347429 353710 Amo06g0487 06 6811218 6818060 hybridization