Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0467 ATGGATAGTGGCAGCGAAGGGAACTTGGACTTTTTGGGTCAATGGACCGATGGATGGAGTAGTGAGTCCGAAGAGGAAGAGGAAGAGGTGTCTAATGGGTTAGAGTCACCGTCACGAGTGGGCAAGGAGAGTGAGCCGGTAGAGAGAGTTGATGTATTTGGTGAAGAGGACAATGGTGGCAGAATGCCTTCATCGGAGTCACCAGGTGGTTCAGGCGATCAAATGAGTGATGATGTCCTTTCTTCGATGCTTTCAACCGCGGCTGCATTGGCCGATGCCGAATTTCATGGGGTTGAAGAGGCTTCTGCAAGATATGTGAAGTATACAAAGGCGACTGGATTTGCTGTTCAAAAAGGGAATTCCATTAAAGATGATGAAGGCAATGTTGTGAGGAAATTTTTCTATTGCAATCGACAGGACTTGCGGGAGAAGAAGCATTATGAGAGGGCGGATAGGAAGAGGGCGCATAAGGCAGAGACTAGGACCAACTGTAGTGCGAAGTTTGTTGTATTTTTAGACAAAGAGAGTGGCAAGTGGAGGACGAAGACATTTGTTCAAGATCACAATCATGATTTGACTTTGTCTGCTTTCACTAATGTGATGGCAGCCCACCGCAATATCAACAAAGAACCGGTCATAACTACTGGACTAGAATCAATTGAGAGGGCCATGTCACAAATCTACACCAGAGAGATATTCTTCGAGGTCAAGAAACAAATCAAAGGGGTGGCTGCGTTGATAGTTCTTCATAGGGAGAGTTCTGGTAGTACGGAGAAGTTCATGTTTAGAAAGTTTCGTAAGCCTCGTCGGGTTTACTCTGTACTGTATGAAAGCAACTCTGAAAGGTATGAGTGTTCTTGCAAGCTTTGGAACAGCATAGGAATTCCATGCAGCCATATCATCTGTGTTTTGAAAAAGTTGGAGAAGGATGCCTTGCCGATGCGGTTGGTGTTGAAAAGATGGTCGAAAGATGCTAAGTCTGGATCATTCGACGACTCAGACGGAGGTTTGGATAGTAATAGAGCATTTCGGGGATGGTATGGTTCGTTGTGGACTTCTTGCCTCCCTATGTGTTTGTTAGCGGCTCAACGGCCTGCCACGTACGAACACGCTGCTGCCAAGATAGCACAGCTATTAAAAGAGATTGAAGTAGAAGTTTCGAAGGGCAACAGTTCAACTTCTGTGCATGATACTGTAGATGGTGAAGATATTTTGGATCCAAAGATTATCAAGTCAAAAGGTGCACCGCGGTCAACCGACAACGGCAAAACAGCTAGGCGGTGCAGGCGCTGCCGCGGTTTTGGACATGATCGACGAAATTGCACAGCAAACAAGGAGGATATGTTAGATGAGGTTAGTGCTAAATTTGAAGTCGTTAATGGTAGTGTTACCATATGA 1398 0.4557 MDSGSEGNLDFLGQWTDGWSSESEEEEEEVSNGLESPSRVGKESEPVERVDVFGEEDNGGRMPSSESPGGSGDQMSDDVLSSMLSTAAALADAEFHGVEEASARYVKYTKATGFAVQKGNSIKDDEGNVVRKFFYCNRQDLREKKHYERADRKRAHKAETRTNCSAKFVVFLDKESGKWRTKTFVQDHNHDLTLSAFTNVMAAHRNINKEPVITTGLESIERAMSQIYTREIFFEVKKQIKGVAALIVLHRESSGSTEKFMFRKFRKPRRVYSVLYESNSERYECSCKLWNSIGIPCSHIICVLKKLEKDALPMRLVLKRWSKDAKSGSFDDSDGGLDSNRAFRGWYGSLWTSCLPMCLLAAQRPATYEHAAAKIAQLLKEIEVEVSKGNSSTSVHDTVDGEDILDPKIIKSKGAPRSTDNGKTARRCRRCRGFGHDRRNCTANKEDMLDEVSAKFEVVNGSVTI* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0467 465 Pfam FAR1 DNA-binding domain 105 193 IPR004330 -
Amo06g0467 465 MobiDBLite consensus disorder prediction 1 78 - -
Amo06g0467 465 SMART 26again6 283 310 IPR006564 GO:0008270
Amo06g0467 465 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 92 198 IPR031052 GO:0006355
Amo06g0467 465 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 220 329 - -
Amo06g0467 465 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 92 198 - -
Amo06g0467 465 MobiDBLite consensus disorder prediction 41 56 - -
Amo06g0467 465 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 220 329 IPR031052 GO:0006355
Amo06g0467 465 ProSiteProfiles Zinc finger SWIM-type profile. 272 308 IPR007527 GO:0008270
Amo06g0467 465 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0467 Amo-Chr6 6499651 6502007 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo06g0467 FAR1 3e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0467 - - ahf:112805345 499.59