Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0466 ATGGAATCGAAAATGTCCTTTACTTCTGGAGGAACCAGTTGCCATGTTACTGGTTCAGCTGCTGAGGATGATTCAAACATGCAAGATGCTGTTGCAACTGAAGAAGGGAGTGGGAGCCAGTGGAGTTTCCTCCCAAAACCATCTCATCATAACTATGTTCAGTATCTGACTGAATCCTCAAACTATCTGCCTAAGACTGAGGATATGATTGGGAGCAATTATGCSGCTCTTGGATTTGGAAACGATGWCAATGGAACAAACATGAACTTCTTTTGTAATGATCCTGGAAAAGCTTATGCCTTTAAAACTGAAGTTCATTCTTCCAATGAAGTTGACATTGGCAAGCAAGTGGGGTATTGGAGACCTGCTGAGAGTGAAGTCCAGCAGGAACCAATGCAATTTGAAAGTACTCAACATCATCACCCTCTCTATCCTGAGAGTCCTGCTTCATGGACGCCAGAAGCAATTGGAGATAATCCTAATGTTTCACGGCTTGATCCATCGGTAATGGCTGGCACACCTAGTTTCCTTCCTAAACCAGCAAGACAGAAAGCCAGTGACCGACAACGCAGGCAACGAATTGCRGATAATCTGAAAGCACTACACGACTTGCTTCCAAATCAAGCAGAGGGTAGTCAAGCTTATATACTGGACGACATTATCGACCATGTTAAATATTTGCAGCTTCAATTAAAGGAACTAAGTGGAAGTAGACTACAAGCTGAATCAACTGCTATACCACTGGTTTTCCATGAGGGTTATGGGCATTATATTGACCAGCAGAAGCTGAATGAACCACTTGAAGAGATGATGGGGAAACTTCTTGAAGAGAATCCTGCATCTGCCAGTCAGCTGCTGGAGAACAATGGTCTTGTCCTGCTGCCTATGGAGTTGGTTCAAGACTTGCACCAATCCATGCAAATCTTCGGCAACAGCAATGCACTTGTCTGA 951 0.4374 MESKMSFTSGGTSCHVTGSAAEDDSNMQDAVATEEGSGSQWSFLPKPSHHNYVQYLTESSNYLPKTEDMIGSNYAALGFGNDXNGTNMNFFCNDPGKAYAFKTEVHSSNEVDIGKQVGYWRPAESEVQQEPMQFESTQHHHPLYPESPASWTPEAIGDNPNVSRLDPSVMAGTPSFLPKPARQKASDRQRRQRIADNLKALHDLLPNQAEGSQAYILDDIIDHVKYLQLQLKELSGSRLQAESTAIPLVFHEGYGHYIDQQKLNEPLEEMMGKLLEENPASASQLLENNGLVLLPMELVQDLHQSMQIFGNSNALV* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0466 316 SMART finulus 184 233 IPR011598 GO:0046983
Amo06g0466 316 MobiDBLite consensus disorder prediction 137 189 - -
Amo06g0466 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 242 IPR036638 GO:0046983
Amo06g0466 316 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 21 299 - -
Amo06g0466 316 Pfam Helix-loop-helix DNA-binding domain 182 228 IPR011598 GO:0046983
Amo06g0466 316 MobiDBLite consensus disorder prediction 1 43 - -
Amo06g0466 316 Gene3D - 180 246 IPR036638 GO:0046983
Amo06g0466 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Amo06g0466 316 CDD bHLH_AtbHLH_like 186 235 IPR045239 -
Amo06g0466 316 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0466 Amo-Chr6 6492782 6496071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0466 186 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 38.655 1.24e-19 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo06g0466 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0466 - - cam:101507064 317.005