Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0443 ATGACGATGATATATTACTCAAATCACAGACCCACTTATTCTCTTTCTTTTCTTCTTCTTGGCAAATTATCAAACACCTACCAGGCACCTCCAATGTCGCTCTTCATCTTCCTCTTCTTTCTCTTCCTCCTCCCGCCGCCATCGCTCTCCCAAAACGACAACGTAACCTGCCCACTCAACACCACCCTCCTCACCACCCTAGGCGGCGGCTCCGAACCATCCTTCGACTCATCCTCAACGTGTCACAACGTCCTCCAAACCCTCCACCTCCTCCAAGCCGACTACCTCCGCCGCCAATCCCGCTTCGTTCCGCCGTTAAACTCCTCCGCCTCATGCTGGTCCACCTTTCAATCCTACATCACCAAATACGAACCCAATTTCGACGTTCGCTCGCGCTGCGGCCTCCAAACCTCCTGGATCTCCTATGGCTGCATGAACATCACCACCCTCCAACAATTCGAGTCCGTCGTCCCCGCCGCAACCATCCAAAGCGTTAAAAGTAGCTGCAACCAGTCTTTGGATAACAACGCACCCTGCGCCAGCTGCACCACCAGCTTGTCCAACTTGCAGTCCTACTTGAACGGCTCCACCGTCGGCAACGTCTCCGAGTGCAGGTCCTACACTTCTATCTACGCTGCTTATCTTGCTGACCCTACTGATACCGGCACCGCTAAGTGCTTGTTCGGCCTTGATTTCTCTTCCTCCGGGAAAAGCAACAACGGTAAGAAGGTTCTTATTGGTGTTGTTGTTGCTGTTTTCTTTGTTTTGGGGTTGGTTTTGTTTGGTGGGTTCTGCGGTTACTTGAGGTGGAAGAAGAAGAGGAACGAGATTACGAAGAAAGGTGGGGTTGGCATGGATCAGATTGGTTTGAGTTCTTCTGGATTGGACTCCATGAACCAGAGCACTACCTTGATTAGGTTCAGCTTCGATGAAATCAAGAGAGCCACCAGGAATTTCTCAAGGGATAACATAATTGGGAGTGGCGGTTATGGCAACGTTTACAAGGGTTTGTTGAACGATGGATCTCAGGTTGCTATGAAGAGGTTCAAGAATTGTTCTGTTGCAGGTGATGCCAGCTTCACTCATGAGGTTGAGGTCATTGCCAGCGTTAGGCATGTCAATCTTGTTGCTTTGAGAGGCTATTGTACGGCCACAACTAATTTAGAGGGTCATCAGAGGATTATTGTGACTGATTTGATGGAAAATGGGAGTCTCTATGATCACTTGTTTGGGTCAAGAGGGAAGAAATTGAGTTGGCCCCTTCGGCAGAAGATAGCTCTCGGAACTGCTAGGGGTTTGGCTTATCTGCATTACGGTGCGCAGCCGTCAATCATTCACAGGGACATTAAGGCTAGCAATATTCTTCTTGATGAGAAATTTGAGGCCAAGGTCGCAGATTTCGGGTTGGCAAAGTTCAATCCGGAGGGAATGACACATATGAGTACTAGAGTTGCCGGTACCATGGGGTATGTTGCTCCTGAGTATGCCCTCTATGGGCAATTGACAGAGAGGAGTGATGTTTTCAGCTATGGTGTCGTGCTTCTTGAATTGTTGAGTGGGAGGAAGGCTCTGGAGATGGACAGCGACGGACAGCCAAATGCACTGACTGACTTGGCCTGGTCATTGGTTAGGGAAGGTAAATCATTGGATGTTATTGAAGATGGAATGCCGGAACAGGGCGCGCCGGAGGTTCTTGAGAAGTATGTGTTGGTTGCTGTGCTGTGCTCACATCCTCAGTTGTATGCTAGGCCTACAATGGACCAGGTTGTTAAGATGCTGGAGACCGATGAGTCTGTGCCTTCGGTTATGGAAAGGCCAATACCTTTTACTGCTGGGAGGATTGATATTGAGAAATCTGCTCTAAGCAACTCAGGGCAGCTTTGTAGTCCAACCGGTTATCAGGCATTCACAATGCAGAGTAAACACCTTTCGGATCCTAATAAGCAAGAAGAGCTTAAGGAAGAAGAAGAGGGAAACTCTGAGTCCGGGACCATGAGCGTGGATTGA 2007 0.4913 MTMIYYSNHRPTYSLSFLLLGKLSNTYQAPPMSLFIFLFFLFLLPPPSLSQNDNVTCPLNTTLLTTLGGGSEPSFDSSSTCHNVLQTLHLLQADYLRRQSRFVPPLNSSASCWSTFQSYITKYEPNFDVRSRCGLQTSWISYGCMNITTLQQFESVVPAATIQSVKSSCNQSLDNNAPCASCTTSLSNLQSYLNGSTVGNVSECRSYTSIYAAYLADPTDTGTAKCLFGLDFSSSGKSNNGKKVLIGVVVAVFFVLGLVLFGGFCGYLRWKKKRNEITKKGGVGMDQIGLSSSGLDSMNQSTTLIRFSFDEIKRATRNFSRDNIIGSGGYGNVYKGLLNDGSQVAMKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSRGKKLSWPLRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGRKALEMDSDGQPNALTDLAWSLVREGKSLDVIEDGMPEQGAPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSVMERPIPFTAGRIDIEKSALSNSGQLCSPTGYQAFTMQSKHLSDPNKQEELKEEEEGNSESGTMSVD* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0443 668 SMART serkin_6 319 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0443 668 Gene3D Transferase(Phosphotransferase) domain 1 400 604 - -
Amo06g0443 668 PANTHER OS01G0253100 PROTEIN 54 646 IPR045271 GO:0004714|GO:0006468
Amo06g0443 668 Gene3D Phosphorylase Kinase; domain 1 288 398 - -
Amo06g0443 668 ProSiteProfiles Protein kinase domain profile. 319 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0443 668 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 54 646 - -
Amo06g0443 668 MobiDBLite consensus disorder prediction 644 660 - -
Amo06g0443 668 MobiDBLite consensus disorder prediction 637 668 - -
Amo06g0443 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Amo06g0443 668 CDD STKc_IRAK 325 594 - -
Amo06g0443 668 Pfam Protein kinase domain 320 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0443 668 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Amo06g0443 668 SUPERFAMILY Protein kinase-like (PK-like) 296 594 IPR011009 -
Amo06g0443 668 Pfam SPARK 52 204 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0443 Amo-Chr6 6278871 6281284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0443 38 638 Receptor kinase-like Gene Family AT2G48010 61.779 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Amo06g0443 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0443 - - gmx:100786298 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0443 06 6278871 6281284 Amo12g3011 12 117745750 117747866 PCT
Amo12g3011 12 117745750 117747866 Amo06g0443 06 6278871 6281284 PCT