Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0442 ATGAAGGACTTGTTAGTGGATTCCCCAGTTTGTGTTCTTGAGGATTTCCTAAGGACCTCAGAATCAGAATCAAGCACTTATTCTTCCAAAGAGCACACTTTGGATTCTGAGTCTCATCAAGATAAGCCTAAACATGTTTCTAAGTGGCACACTTTTGTGCAATTGCTCAGAACCAAGTCAAAGAAGCCTTTGGCCACATTGCATCCTCTTAGTGTTCTCAAGCTCTCAAGAAGAATGAGTGGTAGCATGAGGGAGACTTCACATGCTACCATGGATTCTCATTCCTCATTATTGCATACTTCACCCTGGAAGATCTTCACTCACCATGACTTACAAATTGCTACTAAATATTTCAGCCAAGAGAATTTGATTGGGAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATCATCAGTTAGTAGCAGTTAAAAGACTAACAAGAGGAACAGCTGATGAAACTATAGGCGACTTCTTATCAGAACTTGGAATCATGGCGCATGTAAGCCACACCAACACTGCTAAATTGGTTGGTTATGGTGTGGAAGGTGGAATGCATCTGGTTCTTGAATTGTCTGAAAAAGGAAGCCTAGCTTCAGTTCTTTATGGGTCCAAGGAGAAGCTTCCCTGGTCTATTAGGCAGAGAATTGCATTAGGAACAGCAGAGGGAATATTGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCATAGAGATATAAAAGCTGCAAATATCTTACTCACTGATGACTTTGAGCCTCAGATTTGTGATTTTGGGCTGGCAAAATGGCTACCAGAGAATTGGACTCACCACAGTGTTACAAGATTTGAAGGAACATTTGGATATCTTGCTCCAGAATACTTACTCCATGGCATAGTGGACGAGAAAACAGATGTATTTGCCTTTGGTGTTGTGCTATTAGAATTAGTAACTGGCCGGAGAGCGCTTGATTACTCGCAACAAAGTCTTGTCCTATGGGCAAAACCTTTGCTGAAGAAGAATAAAATTAGGGAGCTGATTGATCCTTCACTAGGAGGTGATGACTTTGATTATAGACAGATTAATGTTATGCTCTTGGCAGCTTCTTTATGCATACAACAATCTTCAATTCGTCGTCCCTCTATGAGACAGATTGTGCAGCTTCTGAAAGGGAATCTTAGCTGCATCAAGTTTGCAAAGAAATCTCGAGTTCCATTCTTCACAAGAGTCTTTCAAAACGAGTTTCTTGACTCTGATTAG 1245 0.4072 MKDLLVDSPVCVLEDFLRTSESESSTYSSKEHTLDSESHQDKPKHVSKWHTFVQLLRTKSKKPLATLHPLSVLKLSRRMSGSMRETSHATMDSHSSLLHTSPWKIFTHHDLQIATKYFSQENLIGKGGYAEVYKGCLPNHQLVAVKRLTRGTADETIGDFLSELGIMAHVSHTNTAKLVGYGVEGGMHLVLELSEKGSLASVLYGSKEKLPWSIRQRIALGTAEGILYLHEGCQRRIIHRDIKAANILLTDDFEPQICDFGLAKWLPENWTHHSVTRFEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNKIRELIDPSLGGDDFDYRQINVMLLAASLCIQQSSIRRPSMRQIVQLLKGNLSCIKFAKKSRVPFFTRVFQNEFLDSD* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0442 414 SUPERFAMILY Protein kinase-like (PK-like) 92 384 IPR011009 -
Amo06g0442 414 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0442 414 Gene3D Transferase(Phosphotransferase) domain 1 195 398 - -
Amo06g0442 414 SMART serkin_6 118 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0442 414 Pfam Protein kinase domain 119 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0442 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Amo06g0442 414 PANTHER OS08G0249100 PROTEIN 7 412 - -
Amo06g0442 414 ProSitePatterns Protein kinases ATP-binding region signature. 124 146 IPR017441 GO:0005524
Amo06g0442 414 PANTHER PROTEIN KINASE FAMILY PROTEIN 7 412 - -
Amo06g0442 414 Gene3D Phosphorylase Kinase; domain 1 77 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0442 Amo-Chr6 6273619 6276098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0442 105 380 Trihelix Transcription Factor Family AT1G68690 43.206 4.66e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo06g0442 Pkinase 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0442 - - gmx:100780587 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0054 16 792950 794834 Amo06g0442 06 6273619 6276098 hybridization
Amo06g0442 06 6273619 6276098 Amo12g3017 12 117794711 117800523 PCT
Amo12g3017 12 117794711 117800523 Amo06g0442 06 6273619 6276098 PCT