Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0428 ATGGACAAAGCTGAGAGAGAGACGCACGACTTCATGAACGTCGACTCTTTCTCTCAGCTTCCCTTCATCCGCCCTGCTCCGCCCCCTAAAGAAAAGGGCATCAGACTGTTCGGCATAGAATTTGGCGACACTTCGCCAATTTCTACTGTCCAAGAGTCTGAATCCGCTGACACAACCACTAACGAAAACAGCAACAACAACTTAGAGAATAATAACAACAACAACAACAACGGCGAGAGTAGCCGGAGGTTCGAATGCCACTACTGCTGTAGAAACTTTCCGACTTCTCAAGCCCTCGGCGGACACCAAAACGCACACAAGAGAGAGAGGCAACACGCGAAACGACAACACCTTCAGTCAGCCATGGTTCACGGTTCCCTCGCCGAAGGCCACCACCAAGTTTACGGATTCATGAACTACAGGTTCGGATCTTTCGGTTCTTCTCCAACAATGGCTGCTTATCCTACATGGAATAACAGTAGCCACAACAACACCGGCGTCGGAAGGTTCTACGGAACCTCGTCATCATATTCTTCTTCTTCTCCTTCTTCTTCTCATCATCAACAGCCACCCATCAATGGTAACCCCTTGTCCGTGTGGCGAATCCCTAACGGTGGTGGTGGTAGTAACAACCCTATCTTGGGGCGCGAACGGGGGTTTCCTTTGCTTGCAGGGGAAGAAGTGAACGCAAGAATAGGAGCAACGAGGGTGGAATTAAGTCCCAATAATAATAATGGTTCACAAAACGGGTATGTTTATGACTCCAAAACAAGCGTTAGTGACCATGTCAGCTTGGATCTTCATCTGTAA 810 0.4864 MDKAERETHDFMNVDSFSQLPFIRPAPPPKEKGIRLFGIEFGDTSPISTVQESESADTTTNENSNNNLENNNNNNNNGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRQHLQSAMVHGSLAEGHHQVYGFMNYRFGSFGSSPTMAAYPTWNNSSHNNTGVGRFYGTSSSYSSSSPSSSHHQQPPINGNPLSVWRIPNGGGGSNNPILGRERGFPLLAGEEVNARIGATRVELSPNNNNGSQNGYVYDSKTSVSDHVSLDLHL* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0428 269 PANTHER ZINC FINGER PROTEIN GIS 1 269 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Amo06g0428 269 MobiDBLite consensus disorder prediction 99 119 - -
Amo06g0428 269 MobiDBLite consensus disorder prediction 45 79 - -
Amo06g0428 269 MobiDBLite consensus disorder prediction 173 213 - -
Amo06g0428 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Amo06g0428 269 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Amo06g0428 269 PANTHER ZINC FINGER PROTEIN GIS 1 269 - -
Amo06g0428 269 MobiDBLite consensus disorder prediction 173 195 - -
Amo06g0428 269 Pfam C2H2-type zinc finger 83 108 - -
Amo06g0428 269 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0428 Amo-Chr6 6104630 6105861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0428 1 269 C2H2 Transcription Factor Family AT2G41940 41.489 1.80e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0428 - - vun:114190818 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0078 16 1016557 1018024 Amo06g0428 06 6104630 6105861 hybridization