Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0404 ATGGCGTCAAGATTTTGGACCCAGGGTGCGAGCGATTCTGAGGAAGAAAGCAGTGACTTTGATGAGGTTGAAGAGACGACGGCRGGTGAGGTCGATCCCGCTYCCAKMAGCAAGTATTTGKKAACTGAGGTGAGTGACAGRGATGACTCGGATAGCCAACGGCGYGTRGTCCGGTCGGCAAAGGATAAGCGATTTGAGGAGATGGCATCTACCGTTGATCAGATGAAGAATGCCATGAAGATCAATGATTGGGTGAGCTTGCAGGAGAGCTTTGATAAGATCAACAAGCAGCTTGAGAAGGTCATGCGTGTTACCGAGTCTGAGAAGGTCCCCAGTCTCTACATCAAGGCCCTGGTGATGTTGGAAGACTTTTTGGCTCAGGCTTTGGCCAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAGGCTTTGAACTCGATGAAGCAGAAGTTGAAGAAGAACAATAAGCAATATGAGGAACTGATTAACAAATGCAGGGAGAGCCCTGAGAGTGAAGAGGAGAAAGAAGAGGAGGAATCCGAGGAAGAGTATGAGAGTGATGGTGAGATTATTGAGCCGGATCAGCTTAAGGGAAGAGATGACCTGAAATCAGATTCTGAAGTCTCTCACTATGAAGATGAAAAGGTGGATGCTGGTGATGGACCCTGGGACCAAAAACTTAGCAAGAGAGACAGACTTATGGATAGGCAATTCATGAAAGACCCTAGCGAGATCACGTGGGACACAGTCAACAAGAAATTCAAGGAGGTTGTGGCAGCAAGGGGCAGGAAGGGAACTGGAAGGTTTGAGCAGGTTGAGCAGCTTACTTTCCTTACAAAAGTTGCTAAAACACCTGCACAGAAGTTGGAGATCCTTTTTAGTGTGGTATCTGCCCAGTTTGATGTTAACCCTGGCCTAAWTGGGCACATGCCCATTAATGTTTGGAAAAAATGTGTGCATAACATGCTGGTCATTCTTGACATTTTAGTGCAATACACTAACATAGTTGTTGATGATGCCGTGGAGCCAGATGAGAATGAAACACAGAAGGGCCCTGACCATAATGGACCAATTCGCATTTGGGGAAACTTGGTCGCTTTCTTGGAAAGAATAGATTCCGAGTTTTTCAAGAGTTTGCAGTGCATAGATCCACATACTCGTGAGTATGTTGAGAGACTCAGGGATGAGCCAATGTTTCTTGTTCTTGCTCAGAATGTCCAGGAATACCTTGAAAGGGTTGGAGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCGTTTACTACAAACCACAGGAGGTTTATGATGCAATGAGAAAATTGGCCGAGTTGGCTGAAGATGGGGATAATGAAGGGGCTGGCGAGGAGAAAGGGTTTGAGGATACAAGAATTCCCACTCCATTTATTGCTACTCCTGAGCTTGTGCCCCGGAAACCTACCTTCCCTGAGAACAGCAGGACTCTAATGGACATATTGGTGACCCTGATATACAAGTATGGTGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGACATATACCACCATGCTCTTCTTGACGAGTTCTCAATATCCCGTGATCTGCTGCTCATGAGCCACTTGCAAGACAGCGTCCAGCATATGGACATATCAACACAGATACTGTTTAACAGGGCTATGGCACAGTTGGGTCTATGTGCTTTTCGGGTTGGGTTGATTTCCGAAGCACATGGCTGTTTATCTGAACTTTATTCTGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTGTGTCACAGAGTCGTTATCATGAAAAGACCCCAGAACAGGAAAGGTTGGAAAGAAGGCGTCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGGCAGTGCATCTTACAACCGCCATGCTTCTTGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCGCAAAGTCATTAGTAAGAATTTCCGCCGCTTACTTGAGGTGAGTGACAAGCAAACATTTACTGGTCCACCTGAAAATGTCAGAGACCATGTTATGGCTGCCACAAGGGCTCTTGCCAAAGGAGACTTCAACAAGGCTTATGACATCATTGTGTCTCTTGACGTTTGGAAGTTTGTCAGAAACAGAGATACTGTACTTGCAATGCTGAAAGATAAGATCAAGGAGGAGGCATTGAGGACATATCTCTTTACGTTCTCATCATCTTATGATTCTTTGAGCCTTGATCAACTCACAAAAATTTTTGATCTCTCTGTTGCTCATACTCATAGCATTGTTAGTAGGATGATGATCAATGAAGAGCTTCATGCAAGCTGGGACCAGCCAACTGGCTGCATTATTTTCCAGGATGTGGAGTACTCTAGGTTGCAGGCATTGGCATTCCAGTTAACAGAGAAGTTATCCATCCTTGCCGAGAGTAATGAAAGAGCAATGGAGGCAACGATAGGTGGTGGTGGATTGGATCTTCCTATGAGGCGTAGGGATGGCCAGGATTATGCTGCTGCTGCTGCTGGTGGAACCAACACTGGGGGTGGCAGGTGGCAGGACTTGGGTTCTCAGACAAGACAAGGTGGTGGGCGATATGGTAGTGAAGGTGGAAGGCCATTGGCTTTAGGCCAAGCTGGTGGGGTTGGATATTCAAGGGACCGGGCAGGACGTGGATCTGGTCGGTATCAAGATTCTGCATATGGAGGTTCAGGCAGGACTCAAGGTGGATCCTCATTGAGGGGACCTCATGGAGATGTATCATCGCGCATGGTTAGCCTCAAGGGTGTGCGTGCTTAA 2796 0.4642 MASRFWTQGASDSEEESSDFDEVEETTAGEVDPAXXSKYLXTEVSDRDDSDSQRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPSLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPESEEEKEEEESEEEYESDGEIIEPDQLKGRDDLKSDSEVSHYEDEKVDAGDGPWDQKLSKRDRLMDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLXGHMPINVWKKCVHNMLVILDILVQYTNIVVDDAVEPDENETQKGPDHNGPIRIWGNLVAFLERIDSEFFKSLQCIDPHTREYVERLRDEPMFLVLAQNVQEYLERVGDFKAASKVALRRVELVYYKPQEVYDAMRKLAELAEDGDNEGAGEEKGFEDTRIPTPFIATPELVPRKPTFPENSRTLMDILVTLIYKYGDERTKARAMLCDIYHHALLDEFSISRDLLLMSHLQDSVQHMDISTQILFNRAMAQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLTTAMLLEVPNMAANVHDAKRKVISKNFRRLLEVSDKQTFTGPPENVRDHVMAATRALAKGDFNKAYDIIVSLDVWKFVRNRDTVLAMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSVAHTHSIVSRMMINEELHASWDQPTGCIIFQDVEYSRLQALAFQLTEKLSILAESNERAMEATIGGGGLDLPMRRRDGQDYAAAAAGGTNTGGGRWQDLGSQTRQGGGRYGSEGGRPLALGQAGGVGYSRDRAGRGSGRYQDSAYGGSGRTQGGSSLRGPHGDVSSRMVSLKGVRA* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0404 931 MobiDBLite consensus disorder prediction 849 863 - -
Amo06g0404 931 MobiDBLite consensus disorder prediction 174 191 - -
Amo06g0404 931 ProSiteProfiles PCI domain profile. 618 790 IPR000717 -
Amo06g0404 931 SUPERFAMILY "Winged helix" DNA-binding domain 714 789 IPR036390 -
Amo06g0404 931 MobiDBLite consensus disorder prediction 140 230 - -
Amo06g0404 931 Pfam PCI domain 658 786 IPR000717 -
Amo06g0404 931 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 930 - -
Amo06g0404 931 SMART PINT_4 719 807 IPR000717 -
Amo06g0404 931 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 46 650 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo06g0404 931 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 719 807 - -
Amo06g0404 931 Coils Coil 143 170 - -
Amo06g0404 931 Gene3D - 726 793 IPR036388 -
Amo06g0404 931 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 862 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo06g0404 931 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 930 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo06g0404 931 MobiDBLite consensus disorder prediction 154 173 - -
Amo06g0404 931 MobiDBLite consensus disorder prediction 42 61 - -
Amo06g0404 931 MobiDBLite consensus disorder prediction 192 230 - -
Amo06g0404 931 MobiDBLite consensus disorder prediction 14 28 - -
Amo06g0404 931 MobiDBLite consensus disorder prediction 838 931 - -
Amo06g0404 931 MobiDBLite consensus disorder prediction 1 61 - -
Amo06g0404 931 MobiDBLite consensus disorder prediction 899 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0404 Amo-Chr6 5497325 5501346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0404 1 931 Eukaryotic Initiation Factors Gene Family AT3G56150 67.582 0.0 1190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0404 K03252 - gmx:100781967 1481.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4074 16 153178908 153182894 Amo06g0404 06 5497325 5501346 hybridization