Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo06g0404 | ATGGCGTCAAGATTTTGGACCCAGGGTGCGAGCGATTCTGAGGAAGAAAGCAGTGACTTTGATGAGGTTGAAGAGACGACGGCRGGTGAGGTCGATCCCGCTYCCAKMAGCAAGTATTTGKKAACTGAGGTGAGTGACAGRGATGACTCGGATAGCCAACGGCGYGTRGTCCGGTCGGCAAAGGATAAGCGATTTGAGGAGATGGCATCTACCGTTGATCAGATGAAGAATGCCATGAAGATCAATGATTGGGTGAGCTTGCAGGAGAGCTTTGATAAGATCAACAAGCAGCTTGAGAAGGTCATGCGTGTTACCGAGTCTGAGAAGGTCCCCAGTCTCTACATCAAGGCCCTGGTGATGTTGGAAGACTTTTTGGCTCAGGCTTTGGCCAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAGGCTTTGAACTCGATGAAGCAGAAGTTGAAGAAGAACAATAAGCAATATGAGGAACTGATTAACAAATGCAGGGAGAGCCCTGAGAGTGAAGAGGAGAAAGAAGAGGAGGAATCCGAGGAAGAGTATGAGAGTGATGGTGAGATTATTGAGCCGGATCAGCTTAAGGGAAGAGATGACCTGAAATCAGATTCTGAAGTCTCTCACTATGAAGATGAAAAGGTGGATGCTGGTGATGGACCCTGGGACCAAAAACTTAGCAAGAGAGACAGACTTATGGATAGGCAATTCATGAAAGACCCTAGCGAGATCACGTGGGACACAGTCAACAAGAAATTCAAGGAGGTTGTGGCAGCAAGGGGCAGGAAGGGAACTGGAAGGTTTGAGCAGGTTGAGCAGCTTACTTTCCTTACAAAAGTTGCTAAAACACCTGCACAGAAGTTGGAGATCCTTTTTAGTGTGGTATCTGCCCAGTTTGATGTTAACCCTGGCCTAAWTGGGCACATGCCCATTAATGTTTGGAAAAAATGTGTGCATAACATGCTGGTCATTCTTGACATTTTAGTGCAATACACTAACATAGTTGTTGATGATGCCGTGGAGCCAGATGAGAATGAAACACAGAAGGGCCCTGACCATAATGGACCAATTCGCATTTGGGGAAACTTGGTCGCTTTCTTGGAAAGAATAGATTCCGAGTTTTTCAAGAGTTTGCAGTGCATAGATCCACATACTCGTGAGTATGTTGAGAGACTCAGGGATGAGCCAATGTTTCTTGTTCTTGCTCAGAATGTCCAGGAATACCTTGAAAGGGTTGGAGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCGTTTACTACAAACCACAGGAGGTTTATGATGCAATGAGAAAATTGGCCGAGTTGGCTGAAGATGGGGATAATGAAGGGGCTGGCGAGGAGAAAGGGTTTGAGGATACAAGAATTCCCACTCCATTTATTGCTACTCCTGAGCTTGTGCCCCGGAAACCTACCTTCCCTGAGAACAGCAGGACTCTAATGGACATATTGGTGACCCTGATATACAAGTATGGTGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGACATATACCACCATGCTCTTCTTGACGAGTTCTCAATATCCCGTGATCTGCTGCTCATGAGCCACTTGCAAGACAGCGTCCAGCATATGGACATATCAACACAGATACTGTTTAACAGGGCTATGGCACAGTTGGGTCTATGTGCTTTTCGGGTTGGGTTGATTTCCGAAGCACATGGCTGTTTATCTGAACTTTATTCTGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTGTGTCACAGAGTCGTTATCATGAAAAGACCCCAGAACAGGAAAGGTTGGAAAGAAGGCGTCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGGCAGTGCATCTTACAACCGCCATGCTTCTTGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCGCAAAGTCATTAGTAAGAATTTCCGCCGCTTACTTGAGGTGAGTGACAAGCAAACATTTACTGGTCCACCTGAAAATGTCAGAGACCATGTTATGGCTGCCACAAGGGCTCTTGCCAAAGGAGACTTCAACAAGGCTTATGACATCATTGTGTCTCTTGACGTTTGGAAGTTTGTCAGAAACAGAGATACTGTACTTGCAATGCTGAAAGATAAGATCAAGGAGGAGGCATTGAGGACATATCTCTTTACGTTCTCATCATCTTATGATTCTTTGAGCCTTGATCAACTCACAAAAATTTTTGATCTCTCTGTTGCTCATACTCATAGCATTGTTAGTAGGATGATGATCAATGAAGAGCTTCATGCAAGCTGGGACCAGCCAACTGGCTGCATTATTTTCCAGGATGTGGAGTACTCTAGGTTGCAGGCATTGGCATTCCAGTTAACAGAGAAGTTATCCATCCTTGCCGAGAGTAATGAAAGAGCAATGGAGGCAACGATAGGTGGTGGTGGATTGGATCTTCCTATGAGGCGTAGGGATGGCCAGGATTATGCTGCTGCTGCTGCTGGTGGAACCAACACTGGGGGTGGCAGGTGGCAGGACTTGGGTTCTCAGACAAGACAAGGTGGTGGGCGATATGGTAGTGAAGGTGGAAGGCCATTGGCTTTAGGCCAAGCTGGTGGGGTTGGATATTCAAGGGACCGGGCAGGACGTGGATCTGGTCGGTATCAAGATTCTGCATATGGAGGTTCAGGCAGGACTCAAGGTGGATCCTCATTGAGGGGACCTCATGGAGATGTATCATCGCGCATGGTTAGCCTCAAGGGTGTGCGTGCTTAA | 2796 | 0.4642 | MASRFWTQGASDSEEESSDFDEVEETTAGEVDPAXXSKYLXTEVSDRDDSDSQRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPSLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPESEEEKEEEESEEEYESDGEIIEPDQLKGRDDLKSDSEVSHYEDEKVDAGDGPWDQKLSKRDRLMDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLXGHMPINVWKKCVHNMLVILDILVQYTNIVVDDAVEPDENETQKGPDHNGPIRIWGNLVAFLERIDSEFFKSLQCIDPHTREYVERLRDEPMFLVLAQNVQEYLERVGDFKAASKVALRRVELVYYKPQEVYDAMRKLAELAEDGDNEGAGEEKGFEDTRIPTPFIATPELVPRKPTFPENSRTLMDILVTLIYKYGDERTKARAMLCDIYHHALLDEFSISRDLLLMSHLQDSVQHMDISTQILFNRAMAQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLTTAMLLEVPNMAANVHDAKRKVISKNFRRLLEVSDKQTFTGPPENVRDHVMAATRALAKGDFNKAYDIIVSLDVWKFVRNRDTVLAMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSVAHTHSIVSRMMINEELHASWDQPTGCIIFQDVEYSRLQALAFQLTEKLSILAESNERAMEATIGGGGLDLPMRRRDGQDYAAAAAGGTNTGGGRWQDLGSQTRQGGGRYGSEGGRPLALGQAGGVGYSRDRAGRGSGRYQDSAYGGSGRTQGGSSLRGPHGDVSSRMVSLKGVRA* | 932 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 849 | 863 | - | - | |
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 174 | 191 | - | - | |
Amo06g0404 | 931 | ProSiteProfiles | PCI domain profile. | 618 | 790 | IPR000717 | - | |
Amo06g0404 | 931 | SUPERFAMILY | "Winged helix" DNA-binding domain | 714 | 789 | IPR036390 | - | |
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 140 | 230 | - | - | |
Amo06g0404 | 931 | Pfam | PCI domain | 658 | 786 | IPR000717 | - | |
Amo06g0404 | 931 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C | 1 | 930 | - | - | |
Amo06g0404 | 931 | SMART | PINT_4 | 719 | 807 | IPR000717 | - | |
Amo06g0404 | 931 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 46 | 650 | IPR008905 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Amo06g0404 | 931 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 719 | 807 | - | - | |
Amo06g0404 | 931 | Coils | Coil | 143 | 170 | - | - | |
Amo06g0404 | 931 | Gene3D | - | 726 | 793 | IPR036388 | - | |
Amo06g0404 | 931 | Hamap | Eukaryotic translation initiation factor 3 subunit C [EIF3C]. | 2 | 862 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Amo06g0404 | 931 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 1 | 930 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 154 | 173 | - | - | |
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 42 | 61 | - | - | |
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 192 | 230 | - | - | |
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 14 | 28 | - | - | |
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 838 | 931 | - | - | |
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Amo06g0404 | 931 | MobiDBLite | consensus disorder prediction | 899 | 914 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo06g0404 | Amo-Chr6 | 5497325 | 5501346 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo06g0404 | 1 | 931 | Eukaryotic Initiation Factors Gene Family | AT3G56150 | 67.582 | 0.0 | 1190 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo06g0404 | K03252 | - | gmx:100781967 | 1481.85 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo16g4074 | 16 | 153178908 | 153182894 | Amo06g0404 | 06 | 5497325 | 5501346 | hybridization |