Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0398 ATGGGCGCAAATTCGTTGCCATCTGACTCCACTCATGATCTCGACGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCACTTTCTGAGCAACAGGTTAGAGTTTTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTGCAGCCTGTGAAAAGCCCCGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGGATTGGAGGGAAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTACGTGGACCGAGGATATTATTCAGTTGAGACTGTAACGCTGCTTGTGGCACTGAAAGTGCGGTATCCTCAACGAATAACCATTCTTAGAGGAAACCATGAAAGCCGTCAGATCACACAAGTATATGGATTTTACGATGAGTGCCTAAGAAAGTATGGTAGTGCTAATGTCTGGAAGATCTTTACAGACCTTTTTGATTTTTTTCCTCTGACCGCATTGGTGGAGTCTGAAATTTTCTGTCTGCATGGTGGACTTTCACCTTCAATTGAGACCCTTGATAACATAAGGAGCTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGGCCATGTGTGATCTTCTGTGGTCTGATCCAGATGACAGATGTGGCTGGGGAATTTCTCCACGGGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTTAATCACACAAACAGTCTGAAGCTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACGATCTTCAGTGCACCCAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGCCACACATTTATCCAGTTCGAACCTGCTCCAAGGAGAGGAGAACCTGATGTTACCCGTAGAACTCCCGATTACTTCCTATAA 942 0.4416 MGANSLPSDSTHDLDEQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRSFDRVQEVPHEGAMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0398 313 Gene3D - 7 313 IPR029052 -
Amo06g0398 313 CDD MPP_PP2A_PP4_PP6 13 297 - -
Amo06g0398 313 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Amo06g0398 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 313 - -
Amo06g0398 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 1 313 - -
Amo06g0398 313 SMART pp2a_7 27 297 IPR006186 GO:0016787
Amo06g0398 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Amo06g0398 313 SUPERFAMILY Metallo-dependent phosphatases 10 298 IPR029052 -
Amo06g0398 313 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Amo06g0398 313 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Amo06g0398 313 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Amo06g0398 313 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Amo06g0398 313 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Amo06g0398 313 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Amo06g0398 313 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0398 Amo-Chr6 5434327 5438616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0398 19 243 Calmodulin-binding Proteins AT5G63870 34.457 3.93e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0398 K04382 - thj:104821037 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4077 16 153251080 153255427 Amo06g0398 06 5434327 5438616 hybridization