Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0348 ATGAAAGCAATCCAATTCCGTACGCCTAGGTTGTACTATGACACATTTCATCCCACAATCCACTTCCAGATACCATCATCATCATTATCACTCCCTAAACCAATGATCTCCCGCTGCAGCATAGTCCAATCTCACCACCCCAATTTCACAATCTCATACCTGATTGACTCATGTGGTCTCTCTCCAGACACTGCTGCTCTTACTTCCCAAAAGCTTCACCTTCCTTCTGCTGAAAGACCAGACTCTGTTCTCACCCTTCTCAGGGAGCATGGTTTCACAGATACCCAGATTTCAAACCTCATCAGAAAACGCCCATTGCTCCTCTTAGCAAACCCAGATATCCTCTTGCCAAAGTTTCAATTTTTCCTCTCCATTGGGATTTCCAATACCAACCTCGCAAGAACCCTAACCGCTGACCCAACCCTTTTGACCCGCAGCTTGGAGAAACAGATCATACCCTCTTACAATTTCCTCAAGAGTGTGTTGATTTCTGATGAAAAGGTTGCAGCTTCATTGAAGCGCACATCTTGGGTCTTCCTTGAGGATCACAAGAAGAACCTCGTACCAAACCTCAATCTCCTAAAAGAGATGGATGTTCCTGAATCATGTGTTACGCTGTTGCTGACTCATTTCCCGGAGGCATTGATGCAGAAAAAGGAAAACTTTGCAAAGCTTTCTAAGGAGATTAAAGAAATGGGGTTTAATCCAAAAAAGACAACTTTTGTGTTGGCCATTCATGTGCTCTCAGGTGAAGGTAACAAATCCATATATAACCGCTGTTACGAGGTTTATAAGAGGTGGGGTTGGTCAGATGATGACATCCTTACGGCATTCAAGAAGCACCCACATTGTATGATACTTTCAGAGGATAAGATAATGAAGACAATGGATTACTTGGTGAATAAGATGGGTTGGCCTTCAGGGATGATTGTTAGGTGCCCAGTGGTGCTGTTTTTCAGCTTGGAGAAGAGGATTAAACCTAGGTGCTCTGTTGCTAAGGTTTTGTTGATGAAGGGATTGATTAAGAGGAAGTTAAGCTTGTCCACTTTGCTGTTGCCTGATGAGGACAGTTTCTTGGAGAAGTATGTGATCAAGTATGAGCTGCAGGTGCCTCAGTTGTGGAGTGTGTATCAGAAAAAGTTGGATTTTATGAGTGTGATTTGA 1164 0.433 MKAIQFRTPRLYYDTFHPTIHFQIPSSSLSLPKPMISRCSIVQSHHPNFTISYLIDSCGLSPDTAALTSQKLHLPSAERPDSVLTLLREHGFTDTQISNLIRKRPLLLLANPDILLPKFQFFLSIGISNTNLARTLTADPTLLTRSLEKQIIPSYNFLKSVLISDEKVAASLKRTSWVFLEDHKKNLVPNLNLLKEMDVPESCVTLLLTHFPEALMQKKENFAKLSKEIKEMGFNPKKTTFVLAIHVLSGEGNKSIYNRCYEVYKRWGWSDDDILTAFKKHPHCMILSEDKIMKTMDYLVNKMGWPSGMIVRCPVVLFFSLEKRIKPRCSVAKVLLMKGLIKRKLSLSTLLLPDEDSFLEKYVIKYELQVPQLWSVYQKKLDFMSVI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0348 387 Pfam mTERF 206 358 IPR003690 GO:0003690|GO:0006355
Amo06g0348 387 Pfam mTERF 84 236 IPR003690 GO:0003690|GO:0006355
Amo06g0348 387 Gene3D Transcription termination factor 3, mitochondrial 145 381 IPR038538 -
Amo06g0348 387 PANTHER CGI-12 PROTEIN-RELATED 30 380 IPR003690 GO:0003690|GO:0006355
Amo06g0348 387 SMART mt_12 98 128 IPR003690 GO:0003690|GO:0006355
Amo06g0348 387 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Amo06g0348 387 SMART mt_12 169 200 IPR003690 GO:0003690|GO:0006355
Amo06g0348 387 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Amo06g0348 387 SMART mt_12 307 338 IPR003690 GO:0003690|GO:0006355
Amo06g0348 387 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Amo06g0348 387 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 30 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0348 Amo-Chr6 4975679 4977313 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo06g0348 mTERF 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0348 K15032 - ahf:112805356 489.574