Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0343 ATGACAGATCCAAGTGCAGAAGTAGTAGCTCTATCACCAACAACATTAATGGCAACAAACAGATTCGTGTGTGAGATATGCAACAAAGGATTCCAGAGGGACCAAAACCTTCAACTACACAGGAGAGGACACAATTTACCATGGAAGCTAAGGCAAAGAACAACCACAGAGGTCAAGAAGCGTGTCTACGTCTGCCCTGAGCCCACGTGCGTTCACCACAACCCATCACGTGCTCTTGGCGACCTCACCGGCATCAAGAAACACTTCAGCCGCAAACAYGGCGAAAAGAAATGGAAGTGTGACAAGTGTTCCAAACGCTACGCTGTTCAATCTGATTGGAAGGCYCACCTCAAAACTTGCGGCACTCGCGAGTATAAGTGTGATTGCGGCACCATCTTTTCCAGAAGAGACAGTTTCATTACTCATCGTGCTTTCTGTGATGCTTTGACCGAAGAAAATAACAAACTTTCTTCCACCCATCAGGGTTTGTTAACAACTGGCATGCCCCCTAGTCAGATTCCATTAACCACTTCTTCTTCTTCATCAGATCAATTATTCATCACTGATCCACCACTTATCATTCCAACAACAACTCCTTTCAATAACTCCATCTTCTCATCGACAACTACTTCTTCTTCTTGTTCTTCTTCAACGCTTCAGCTGAGTTCTAGTGGCTTCAACAATGTTATTCTTTCTAATCCATCTTCTTCATCATCGCCTCACATGTCTGCAACTGCTCTGTTGCAGAAAGCAGCTCAAATGGGTGCAACTGCAAGTAACAACAGCATGAATTATTCACCCATGATGCAGAAAAGCTTCTCCATGGGAACAACTACCATGGCTGGAGTAGTTAGTGGTGGCCATGATGCTGCATTTACAAACCAATTGTTTCAGAAAGAAATCGTCTCATCACAACTGTTTGATGCAAACACTACTACTAATAGTGGTACTAATAATGATATGGGAATGTATGGTCAAATGTTCATGGGAACAATTACTAGTAATAATAATAATAATAATAATAATAATGGGTTGATGAAGATTAGTAGTGATGTGGAACAAGAGATTAGTGATGATGATAATAATAATAATAACAATACGATAATGGTGGAGGCATCAAGGTTTGGAGGAGGGAGTGGAAGGGATGATGATATTGCAACTGTTCATGATTTCTTGGGAATTGGTGGAGCTTCATCAATTGCTTCAACAGCAACAGTGAGTTTGCATGAATCAGAGCAACAGCAAAGATTAGTAGCAGAGACATTGAATCAGCAGAGGTTGCAGATTATGAACCACTTTCATCACCATATTCCTCCTCATCATGCTGCAGATTCAGCTATTGACAAAACTATGTGGGATGTTTGA 1365 0.4139 MTDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVKKRVYVCPEPTCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHLKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNKLSSTHQGLLTTGMPPSQIPLTTSSSSSDQLFITDPPLIIPTTTPFNNSIFSSTTTSSSCSSSTLQLSSSGFNNVILSNPSSSSSPHMSATALLQKAAQMGATASNNSMNYSPMMQKSFSMGTTTMAGVVSGGHDAAFTNQLFQKEIVSSQLFDANTTTNSGTNNDMGMYGQMFMGTITSNNNNNNNNNGLMKISSDVEQEISDDDNNNNNNTIMVEASRFGGGSGRDDDIATVHDFLGIGGASSIASTATVSLHESEQQQRLVAETLNQQRLQIMNHFHHHIPPHHAADSAIDKTMWDV* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0343 454 Gene3D Classic Zinc Finger 76 156 - -
Amo06g0343 454 SMART c2h2final6 22 44 IPR013087 -
Amo06g0343 454 SMART c2h2final6 63 93 IPR013087 -
Amo06g0343 454 SMART c2h2final6 98 118 IPR013087 -
Amo06g0343 454 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 421 - -
Amo06g0343 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 44 IPR013087 -
Amo06g0343 454 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 2 421 - -
Amo06g0343 454 Pfam Zinc-finger of C2H2 type 22 44 - -
Amo06g0343 454 SUPERFAMILY beta-beta-alpha zinc fingers 21 118 IPR036236 -
Amo06g0343 454 Gene3D Classic Zinc Finger 2 68 - -
Amo06g0343 454 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0343 Amo-Chr6 4899762 4901126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0343 1 263 IDZ Gene Family AT3G50700 56.410 4.35e-109 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo06g0343 zf-met 0.0032 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0343 - - adu:107492404 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0865 16 13904949 13906265 Amo06g0343 06 4899762 4901126 hybridization