Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0340 ATGGACATGCCCACACCTAAACCTACCGCCAATGTAAAATATCAGATCATCGCAACACAACTCATTCGATTCGATTTCATTGGGTTTTGGTGGATGATGACGAAGAGGAAAAGCCAGAGGATTGGGAAGAAGGAGAGGAGCAAGTTCACGATGAAGAAGGGTACTCTTTCAACCACTTCCCACCTTCAGCTTCAGCTAGGTCAAGTTTCTCTCTTTCCACTCCTTCATCCTCCATCTTCTTCTTCTGCTTCCGCTCCTTCTTCCCGCTTCCAGAGCCTTCTAGATGCTGAATCTCACCGCCCAAACCCTCCCGCGGTCAACGATAACAACAACGCCTCCGACGACAGAGACTGTATTCTTAGCCAGGACTTCTTTTGCACTCCGGATTATATTACGCCGGATAATCAGAATTTCAACGGCTTGGATTTCAATATGGAGAATACCCCTTGCCCTAAATCACCGGAGAAGCTCAACACTACAAAAAGCAAGAGGTGCCGATTGGATGCTATCTCAGTTAATCCTCTCAGCCCAAACTTTTCTGGTGACCATCAACAAGTTGTTGAACTTGGAAAGGACTCTGTTGGGGAGGAAGTAGCTGCTGAGAAAACAGTAGCAGCTGATAAACCAAAGGCCCAAAATTATGTGTCACATTCTGCAGTTGCATTGCGCTGCAGGGTTATGCCTCCTCCCTGCATCCAGAATCCATATTTGAAAGATGTTTCACAAAAGGAGACAGACCCCTTTGGAAACCAAAGGATAAAATGTGCAGGTCTCTTCCCTGGAATAACTGGTGATGATGGTCTTTCACGCTATCGCACTGATTTTCATGAGATTGAGCAAATTGGTAGAGGGCACTTTAGTAGTGTTTTCAAAGTATTAAAACGAATAGATGGGTGCCTTTATGCTGTGAAACGCAGTGCCAGACAGTTACGACTGGAAACAGAAAGGAGAAAAGCTTTGATGGAAGTTCAAGCATTGGCTGCATTAGGTTCTCATGCAAACATAGTGGGATACTACTCTTCATGGTTTGAAAATGAACAGCTGTATATTCAGATGGAGCTTTGTGATCACAGCTTATCCATAAACAAATGCTCTTCATCAYTTACAGAAGGACAAGTGTTAGAGGCTCTATATCAGATTGCCAATGCACTGCGGTTTATACACGAGAAGGGAATAGCTCATTTAGATGTCAAGCCTGATAATATTTATGTCAAAAATGGTGTATATAAACTTGGTGATTTTGGATGTGCAACTCTCCTTGACAATAGCCTCCTGGTTGAGGAGGGAGATGCACGTTATATGCCTCAGGAAATCCTCAATGATAATTATGATCACCTTGACAAAGTTGATATCTTTTCTTTGGGAGCTTCTGTGTATGAGTTCATTCGGCGATTGCCTTTGCCAGAATCAGGATSCCAATTTTTTAATCTTAAAGAGGGAAAGCTACCACTTTTGCCTGGCCACTCATTGCAATTCCAAAACTTGCTCAAGGCCATGATGGACCCTGATCCAGTTAAGCGKCCTTCTGCTCGGGAGTTGATAGAGAATCCAATTTTCGACAAGGTCAYTAGAACAGCCAAAATTTGA 1587 0.4335 MDMPTPKPTANVKYQIIATQLIRFDFIGFWWMMTKRKSQRIGKKERSKFTMKKGTLSTTSHLQLQLGQVSLFPLLHPPSSSSASAPSSRFQSLLDAESHRPNPPAVNDNNNASDDRDCILSQDFFCTPDYITPDNQNFNGLDFNMENTPCPKSPEKLNTTKSKRCRLDAISVNPLSPNFSGDHQQVVELGKDSVGEEVAAEKTVAADKPKAQNYVSHSAVALRCRVMPPPCIQNPYLKDVSQKETDPFGNQRIKCAGLFPGITGDDGLSRYRTDFHEIEQIGRGHFSSVFKVLKRIDGCLYAVKRSARQLRLETERRKALMEVQALAALGSHANIVGYYSSWFENEQLYIQMELCDHSLSINKCSSSXTEGQVLEALYQIANALRFIHEKGIAHLDVKPDNIYVKNGVYKLGDFGCATLLDNSLLVEEGDARYMPQEILNDNYDHLDKVDIFSLGASVYEFIRRLPLPESGXQFFNLKEGKLPLLPGHSLQFQNLLKAMMDPDPVKRPSARELIENPIFDKVXRTAKI* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0340 528 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 446 522 - -
Amo06g0340 528 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 112 433 - -
Amo06g0340 528 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524
Amo06g0340 528 ProSiteProfiles Protein kinase domain profile. 275 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0340 528 MobiDBLite consensus disorder prediction 77 114 - -
Amo06g0340 528 Pfam Protein kinase domain 275 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0340 528 Gene3D Phosphorylase Kinase; domain 1 265 353 - -
Amo06g0340 528 SMART serkin_6 275 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0340 528 SUPERFAMILY Protein kinase-like (PK-like) 269 522 IPR011009 -
Amo06g0340 528 MobiDBLite consensus disorder prediction 77 95 - -
Amo06g0340 528 PANTHER BNAA08G27310D PROTEIN 446 522 - -
Amo06g0340 528 PANTHER BNAA08G27310D PROTEIN 112 433 - -
Amo06g0340 528 Gene3D Transferase(Phosphotransferase) domain 1 354 524 - -
Amo06g0340 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0340 Amo-Chr6 4863448 4866614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0340 32 522 Core Cell Cycle Gene Families AT1G02970 60.685 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Amo06g0340 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0340 K06632 - gmx:547742 763.451