LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo06g0338	ATGTTTGTGTTTTGTTTTGTGGCAGATGGGGCTGGTGATGATTTGTTTAAAGAGCTATGGAGGTTGTGTGCAGGGCCATTAATGGATGTTCCTTGTGTTCAAGACAGAGTTTTCTATTTCCCTCAGGGTCACATTGAATTGTTGCCAGAACCTACAGAACAAGAATTGAGGCAGATGAAGAACCAGAAATCTCCCAAATACGATCTTCCGTCGAAGATCTTATGCCGTGTTATCGATGTTAAGTGTCTGGCCGAGATGGAAACCGACGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATAATGATCCTCTAGATCCTAATCCAATTTGTTCCGAGAAACCGAAACAGAAATTTTACTCATTTTGTAAGACACTGAGTACCTCAGATACTAGCACACATGGAGGATTTTCGGTTCTTCGGAAGCATGCTAATGAATGCTTGCCTCAATTGGATATGACAATGGAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTGAATGGAAGTTTAAGCATATATACAGAGGACATCCGAAGAGGCACCTGCTTACAACTGGCTGGAGTGCATTCGTTGCGGCCAAGAAATTGGTTGCCGGAGATTCTTTTGTTTTTCTAAGGGGAGAGAATGGACAACTGAGAGTAGGCGTTAGGCGTTTGAATCCGCCGCAGAGTCCTACACCTTCCTCGGTGGTGTCGACACAAAACATGCGCCTCGGAGTGATTGTTACTGCAAGCCATTCTGTTATGACTAGTACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTAGTTTAAACAAATATATTGACACGATGAACAATGACTTCAAAATCGGCATGCGATTCAAGATGAGACATGAGGGTGAAGATCCACTTGACAAAAGGTTTTGTGGTACTATAGTTGGAGTTGGAGATGAATCTCGAGAATGGCCGAATTCTCAATGGAGGTCATTGAAGGTTCAATGGGATGAACCAGCAACAATGCAAAGACCAGATAGAGTTTCATGTTGGGAGATTGAACCTCTTGTTACTTCGCCTTTGAATACGATTCAACCGATGGCGAAGGGAAAAAGATCAAGGCATGCTGAGGCTTCATCTTCTGCTGCTTCAGGTAGCAAAGAAAGCCAAGTAGCTACAATATGGCAGCCACCACATTTGAATGGCAATGGAAATTCTTCTCAAGATCCCAAAAACAACAAAGCCGTCGTCCCGGCCGGTCCAGCTGGCGAAGGTCCGGCATGCGACCATAACGAAGACGGGAAGAAGGGCATGGATTGCTGGTTGTTTGGGGTGAATTTGACTAGCAGCTATAGTAATGTTGTTACCCCTTTGGAGAAAGAACTTTGGTGTGAAGCTTCAACTATCCTTCATTGTGGTCCCAAAGAATCTATTATTGTTGGTGCATGTGAGACTGAGAAGGTTCAGAGTCTCAATAACCATTCACTGTCCAACAAGCAGGGCCATGTACCATCCATGAGGACTAGGACTAAGGTGAAAATGGAAGGTGTAGCAGTTGGTCGTGCAATTGACTTGACCACATTAAATGGTTATGATGAACTCATAGTTGAGCTTGAGAAAATGTTTGACATTGAAGGAGAAATTATATCTCAGAAGAAATGGGCTGTTACTTTCACTGATGAAGAAAATGACCTTATGCTTCTTGATGATGATTTATGGCAGTGA	1710	0.4316	MFVFCFVADGAGDDLFKELWRLCAGPLMDVPCVQDRVFYFPQGHIELLPEPTEQELRQMKNQKSPKYDLPSKILCRVIDVKCLAEMETDEVYARITLQPSSDNDPLDPNPICSEKPKQKFYSFCKTLSTSDTSTHGGFSVLRKHANECLPQLDMTMENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVAGDSFVFLRGENGQLRVGVRRLNPPQSPTPSSVVSTQNMRLGVIVTASHSVMTSTMFVVYYKPRTSQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIVGVGDESREWPNSQWRSLKVQWDEPATMQRPDRVSCWEIEPLVTSPLNTIQPMAKGKRSRHAEASSSAASGSKESQVATIWQPPHLNGNGNSSQDPKNNKAVVPAGPAGEGPACDHNEDGKKGMDCWLFGVNLTSSYSNVVTPLEKELWCEASTILHCGPKESIIVGACETEKVQSLNNHSLSNKQGHVPSMRTRTKVKMEGVAVGRAIDLTTLNGYDELIVELEKMFDIEGEIISQKKWAVTFTDEENDLMLLDDDLWQ*	570

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo06g0338	569	SUPERFAMILY	CAD & PB1 domains	496	568	-	-
	Amo06g0338	569	Gene3D	-	498	569	-	-
	Amo06g0338	569	Pfam	B3 DNA binding domain	123	223	IPR003340	GO:0003677
	Amo06g0338	569	Pfam	AUX/IAA family	494	558	IPR033389	-
	Amo06g0338	569	ProSiteProfiles	PB1 domain profile.	502	569	IPR000270	GO:0005515
	Amo06g0338	569	SMART	B3_2	123	225	IPR003340	GO:0003677
	Amo06g0338	569	Gene3D	-	121	224	IPR015300	-
	Amo06g0338	569	MobiDBLite	consensus disorder prediction	359	425	-	-
	Amo06g0338	569	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	9	393	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Amo06g0338	569	PANTHER	AUXIN RESPONSE FACTOR 11	426	569	-	-
	Amo06g0338	569	Gene3D	-	284	355	-	-
	Amo06g0338	569	SUPERFAMILY	DNA-binding pseudobarrel domain	111	250	IPR015300	-
	Amo06g0338	569	PANTHER	AUXIN RESPONSE FACTOR 11	9	393	-	-
	Amo06g0338	569	ProSiteProfiles	B3 DNA-binding domain profile.	123	225	IPR003340	GO:0003677
	Amo06g0338	569	CDD	B3_DNA	122	223	IPR003340	GO:0003677
	Amo06g0338	569	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	426	569	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Amo06g0338	569	Pfam	Auxin response factor	249	328	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Amo06g0338	569	MobiDBLite	consensus disorder prediction	372	408	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo06g0338	Amo-Chr6	4837654	4841202	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo06g0338	13	568	B3 DNA Binding Superfamily	AT2G46530	51.228	0.0	551

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Amo06g0338		B3	8e-22	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo06g0338	K14486		-	gmx:100795763	682.174