Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0328 ATGGATGCATTTGCAAATCAAGAAGATGAAAATGGTGTGATTGCTGAAAGCTCTGCTTTTGTTAAAGGGGAACTTCCAGCAGAATATAGCGTCCCGCCGAAAATTGATTCTGAAGTTGAAGTCCTTCACGAGAAGGTCACTAAGCAAGTAATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTTATTCATTACAGGGGTTGGTCTGAAAGCACCCAGCACAAGTTTGAAGACACGTGGCAAGAACAGCGACCAATTGAGATGGTATTAGGAAAAGAAAAGAAAGAAATGACTGGCTTGGCCATTGGTGTGGCAAACATGAAAGATGGTGAGCGTGCATTGCTACGTGTGGGTTGGGAATTAGGATATGGCGAGGAAGGAAGTTTTTCTTTCCCCAATGTTCCTCCCAGGGCAGATTTAGTTTATGAAGTCGAGCTTATTGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGCGATATGACTGTGGAGGAAAGGATTGGTGCAGCAGATCGTAGAAAGATGGATGGAAATGTTTTGTTTCAGCAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCATATATGGGAGATGACTTCATGTTTCAGCTGTTTGGGAAATATAGGGATATGGCTTTGGCTGTAAAGAACCCATGCCATCTTAACATGGCAGCTTGTCTGATTAAGCTGAACCGTTATGAAGAAGCTATAGGACAATGTACAATTGTACTGACTGAGGATGAAAACAATGTCAAAGCTCTATTTAGGAGAGGCAAGTCTAGGGCAGCACTTGGGCAAACAGATGCTGCCAAGGAAGATTTTCAAAAGGCACGCAAGTATGCTCCTGAAGACAAAGCCATTGCAAGAGAATTAAGGTTGCTTGCTGAACACGACAAAGTTGTTTATCAAAAGCAGAAAGAACTATACAAAGGAATCTTTGGACCAAGACCAGAACCAAGATCTAGTAATATGCGAAGTGGTAACTTGCTGATTCTCATTTGGCAGTGGTTGCTTTCACTATTTTATGGCCTTGTTAATCTCTTCAAGCGTAAAAGCCCCAAATCTGACTAA 1095 0.4192 MDAFANQEDENGVIAESSAFVKGELPAEYSVPPKIDSEVEVLHEKVTKQVIKEGHGQKPSKYSTCFIHYRGWSESTQHKFEDTWQEQRPIEMVLGKEKKEMTGLAIGVANMKDGERALLRVGWELGYGEEGSFSFPNVPPRADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNVLFQQEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCTIVLTEDENNVKALFRRGKSRAALGQTDAAKEDFQKARKYAPEDKAIARELRLLAEHDKVVYQKQKELYKGIFGPRPEPRSSNMRSGNLLILIWQWLLSLFYGLVNLFKRKSPKSD* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0328 364 SUPERFAMILY FKBP-like 25 160 - -
Amo06g0328 364 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 26 322 - -
Amo06g0328 364 ProSiteProfiles TPR repeat profile. 259 292 IPR019734 GO:0005515
Amo06g0328 364 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP42-RELATED 26 322 - -
Amo06g0328 364 Pfam Tetratricopeptide repeat 260 292 IPR013105 -
Amo06g0328 364 Gene3D Tetratricopeptide repeat domain 156 287 IPR011990 GO:0005515
Amo06g0328 364 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 62 154 IPR001179 GO:0003755
Amo06g0328 364 SMART tpr_5 174 207 IPR019734 GO:0005515
Amo06g0328 364 SMART tpr_5 225 258 IPR019734 GO:0005515
Amo06g0328 364 SMART tpr_5 259 292 IPR019734 GO:0005515
Amo06g0328 364 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 58 151 IPR001179 GO:0003755
Amo06g0328 364 SUPERFAMILY TPR-like 166 305 IPR011990 GO:0005515
Amo06g0328 364 Gene3D - 30 155 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0328 Amo-Chr6 4714500 4717997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0328 39 340 Calmodulin-binding Proteins AT5G48570 31.715 4.33e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0328 - - gmx:100790587 621.698