Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0324 GTAGTAACCCATTTTATTTCCACTCATTTCCCCTTCATTTTCATCATCATCAACATCATCGTTCTCTCTGACTGTGCGGTCTCAGTCTCAGTCTCCATGGCAACTCAAGGTCAAGTCATTACTTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCTTTGTCCATCGAAGACGTTCAGGTGGCTCCACCGCAAGCCGGCGAGGTTCGAGTCAAGATCCTCTACACTGCTCTCTGTCACACCGATGCTTACACCTGGAGCGGAAAGGATCCTGAAGGTCTCTTCCCTTGTATCCTTGGCCATGAAGCTGCTGGAATTGTGGAGAGTGTTGGAGAAGGTGTTACTAATGTGCAGCCTGGAGATCATGTTATTCCATGTTACCAGGCTGAATGTGGTGAGTGCAAGTTCTGCAAATCTGGAAAAACGAACCTCTGTGGGAAGGTTCGTTCCGCCACTGGAGTTGGAGTGATGCTTAGCGACCGCAAAAGTCGTTTCTCTATCAATGGGAAGACCATTTATCATTTCATGGGAACTTCCACCTTCAGCCAGTACACTGTTGTTCATGATGTAAGTGTGGCTAAGATTGATCCAGCTGCTCCTTTGGATAAAGTTTGTCTTCTTGGTTGCGGTGTTCCAACCGGGCTTGGAGCTGTATGGAACACTGCAAAAGTTGAACCAGGGTCAATTGTTGCTGTTTTTGGCCTTGGAACTGTTGGTCTTGCTGTTGCAGAGGGTGCAAAAAGTGCCGGTGCATCTCGTATTATTGGCATTGATATCGATAGCAAGAAATTTGATACAGCGAAGAACTTTGGAGTCACCGAGTTTATTAATCCTAAAGAACACGATAAACCAATTCAGCAGGTCATAGTTGATCTTACAGATGGCGGAGTTGATTATAGCTTTGAGTGCATTGGGAATGTCTCCGTCATGAGAGCTGCTCTGGAATGCTGCCACAAGGGCTGGGGAACATCAGTTATCGTGGGTGTTGCAGCATCGGGCCAAGAGATATCTACCCGCCCTTTCCAATTGGTGACGGGGCGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAAGTGCCTTGGCTTGTGGAGAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCACAATCTGACGCTCGGCGAGATCAACAAGGCTTTCGATCTTATGCACGGAGGAGGATGTCTCCGTTGTGTTCTTTCAACAGATGCATGA 1236 0.4765 VVTHFISTHFPFIFIIINIIVLSDCAVSVSVSMATQGQVITCKAAVAWEPNKPLSIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTNVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSINGKTIYHFMGTSTFSQYTVVHDVSVAKIDPAAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDTAKNFGVTEFINPKEHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLGEINKAFDLMHGGGCLRCVLSTDA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0324 411 SUPERFAMILY GroES-like 358 407 IPR011032 -
Amo06g0324 411 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 100 114 IPR002328 GO:0008270|GO:0016491
Amo06g0324 411 Pfam Alcohol dehydrogenase GroES-like domain 67 194 IPR013154 -
Amo06g0324 411 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 42 407 IPR014183 GO:0006069|GO:0008270|GO:0051903
Amo06g0324 411 PANTHER ALCOHOL DEHYDROGENASE 35 410 - -
Amo06g0324 411 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 200 373 IPR036291 -
Amo06g0324 411 Pfam Zinc-binding dehydrogenase 238 360 IPR013149 -
Amo06g0324 411 CDD alcohol_DH_class_III 40 407 IPR014183 GO:0006069|GO:0008270|GO:0051903
Amo06g0324 411 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 35 410 - -
Amo06g0324 411 Gene3D - 45 404 - -
Amo06g0324 411 SUPERFAMILY GroES-like 35 230 IPR011032 -
Amo06g0324 411 Gene3D - 214 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0324 Amo-Chr6 4695279 4698623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0324 42 363 Monolignol Biosynthesis Gene Families AT1G72680 26.911 1.61e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0324 K00121 - fve:101306577 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1550 16 28722610 28725939 Amo06g0324 06 4695279 4698623 hybridization
Amo06g0324 06 4695279 4698623 Amo12g0908 12 20236346 20241020 PCT
Amo12g0908 12 20236346 20241020 Amo06g0324 06 4695279 4698623 PCT