Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0316 ATGTCTACAACACTACCTCCTTCTTCTTCTTCTGTTGGATCGTCTAATACCCTTTTGAATGAGATCCTTTCTTTGCCAGTTTTGGAACTTGTAGCAACGTGTGCCAACTTGGCACTGCTGCTTGTGTTTCTCATTGTTATCTTTTCAAGAAAGGTGCTTGGGAACGTGGGAAGTGTTAGATATGACAATAAGGATGATATTGCAAGCAATGGTGGCGCAGTTAGTCCTAGAGTTGTTGATGCACAAACACATCAAGTTAGGATTGGTACATGGTTCAAGCTTTCGGTCTTGTCTTGTCTCTATGTTCTGTTGGTGCAACTTGTGGTGTTGGGGTTTGATGCTGTAGCTTTGATTCAGGGAAAGGGTAATTTGTCTGTAATTTTGTTGCCAGTTTCTCAGGGTTTGTCTTGGATTGTGTTGAGCTTCTTGGCTTTAAATTGCAAGGCTCAGAGGCTTGATAGGTTTCCATTTTTGTTGAGAGTTTGGTGGAGTGTGTCATTTGTTATTTGCTTGTGCACTTTGTATGTTGATGGGAGGGGGTTATGGGATGAAGGTTACAAGCATTTGCAGTCCCATGTGGTGGCGAATTTCGCAGCCACGCCTGCACTTGCCTTCTTGTGTATTGTTGCAGCTAGGGGTGCTACCGGTATTGAAGTCTGTGGGGATTCGGATTTTCGAGAGCCGTTGCTTGCTGAAGAAGAATCAGGGTGTGTGAAGGTTACTCCATACAGTGATGCTGGAATTTTTAGCCTGGCTACTCTGTCTTGGCTGAACCCAATTCTTTCCCTCGGCGCAAGGCGACCATTGGAGCTTAAGGACATTCCCCTAGTGGCACGAAAAGATCGAGCTAAGACAAATTACAAGATTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATTCGTCCGGACAGCCTTCGTTAGCTTGGGCACTTCTCAGATCATTTTGGAAGGAAGCAGCTTGGAATGCCATCTTTGCTGGTTTGAATACTCTTGTTTCTTATGTTGGTCCTTACATGGTAAGCTACTTTGTTGATTACTTGAGTGGCAAACAAAGTTATCCGAACGAGGGCTATGTCCTCGCTGGGATATTCTTCGTGGCGAAGCTTGTTGAGACCTTTACAACTCGTCAATGGTATCTAGGAGTGGATATCTTGGGCATGCATGTTAGATCAGCTCTAACAGCGATGGTGTATCGAAAGGGGCTTAGACTCTCGAGCTTAGCGAAGCAAAGTCACACAAGTGGAGAGATTGTTAACTACATGGCTGTAGATGTTCAAAGAGTAGGGGACTACTCTTGGTACCTTCATGATATGTGGATGCTTCCTATGCAGATTGTTCTTGCCCTTCTAATCTTGTACAAGAACGTTGGAATTGCTTGTATTGCAACACTGATTGCTACCATCATTTCAATTGTTGTCACTGTTCCAGTAGCTAGGATCCAAGAAGATTATCAAGACAAGTTAATGGCTGCAAAAGATGAAAGGATGAGAAAAACATCTGAGTGCTTAAGGAACATGAGGATTCTCAAGTTGCAAGCTTGGGAAGACAGGTATCAAATAAAGTTAGAGGAGATGCGTGGAGTCGAGTTCAAATGGCTTCGAAAAGCGTTGTACTCGCAGGCTTTCATAACATTCATATTCTGGAGCTCCCCCATTTTTGTTTCAGCTGTCACTTTCGCTACATGCATATTGCTGGGTGGAGAGTTGACTGCAGGTGGTGTGCTTTCTGCTTTGGCTACTTTTAGAATCCTCCAAGAACCTCTCAGGAATTTTCCGGACTTGGTTTCAACAATGGCTCAGACTAAGGTTTCGATTGATCGAATATCTTGTTTCCTGCTTGAGGAAGAGTTGCAGGAAGATGCAACTATTGTCTTACCTCATGGAATCTCTAATGTTGCAGTAGAAATTAAGGATGGCATCTTCTGTTGGGACCCTTCTTCATCTTCTAGACCAACTCTATCAGGGATTCATATGAAGGCCGAAAAAGGAATGCGTGTGGCTGTTTGTGGTATGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCCGGCGAAGTAAGGGTGTGCGGCTTGTCTGCATATGTCTCGCAATCAGCATGGATACAGTCTGGAAACATAGAGGAAAATATTCTGTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCTCTTAAGAAGGACTTGGAGCTTTTCTCACATGGTGATCAAACAATTATTGGTGATAGAGGCATAAACCTGAGTGGTGGCCAGAAGCAGCGTGTTCAGCTCGCACGAGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTTAGTGCAGTTGATGCTCACACCGGATCAGAATTGTTTAGGGAGTATATATTGACAGCACTAGCAAATAAAACAGTAATCTATGTGACACATCAAGTTGAATTTCTTCCTGCTGCTGATTTGATACTGGTTCTCAAAGAAGGCTGCATCATACAAGCTGGAAAATATGATGATCTCTTACAAGCAGGAACAGATTTTAATGCTCTAGTTTCTGCTCACCATGAAGCCATAGAGGCTATGGAAATTCCTAGTTTCTCATCTGAAGATTCCGAAGAACATTTATCCTTAAATGCATTGGTTATATCCAGTAAGAAGTCTATTTGTTCCACAAATGATATTGACAATTTGGCAAAGGAACTGCAAGAGGGATCATCGAATTCAGATCAAAAAGCGATTAAGGAGAAGAAGAAAACAAAACGCTCAAGGAAAAAGCAACTAGTTCAAGAAGAGGAGAGGGTCAGAGGTAGAATCAGCATGAAGGTTTATTTGTCATACATGGCAGCAGCATATAAAGGGTTATTGATTCCTCTCATAATCATGGCGCAAACGTTCTTTCAGTTTCTACAGATTGCTAGTAATTGGTGGATGGCTTGGGCTAACCCACAAACTGAAGGAGACCTGCCAAAAGTATCTCCCACAGAGCTTCTTGTTGTTTACATGGCCCTCGCTTTCGGCAGCTCCTGCTTTATATTTGTAAGGGCTATTCTGGTGGCTACATTTGGCCTTGCAGCAGCTCAGAAGCTGTTCTTGAAGATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTCGACTCTACACCTGCCGGACGGATCTTGAATCGTGTATCAGTTGATCAAAGTGTTGTGGATCTTGACATTCCTTTCAGACTCGGTGGCTTCGCTTCGACAARAATACAACTTATTGGTATTGTTGGTGTGATGACAGAAGTCACATGGCAAGTTTTGCTCCTAGTTATCCCAATGGGTGTTGCTTGTTTGTGGATGCAGAAATACTATATGGCTTCCTCGAGGGAACTAGTCCGAATTGTAAGCATCCAGAAGTCTCCAATRATAAATCTTTTTGCTGAATCAATTGCTGGAGCSTCTACAATAAGAGGATTTGGACAAGAAAAGAGGTTTATGAAGCGAAATCTCTATCTTCTAGATTGCTTTGCTCGGCCATTCTTCTGCAGTCTTGCTGCTATCGAATGGCTCTGCTTGCGGATGGAGTTACTGTCAACTTTTGTATTTGCTTTCTGCATGGTATTACTTGTAAGCTTCCCCCATGGAAGCATTGATCCCAGCATGGCTGGACTTGCTGTGACTTATGGACTCAATTTGAATGCACGTTTATCGAGATGGATACTTAGCTTCTGCAAACTCGAAAATAAAATCATTTCTATTGAAAGAATTTACCAATACAGTCAAATTCCAAGTGAAGCACCAGCAATCATTGAAGATTTTCGCCCTCCACCCTCATGGCCTGAAAATGGAACAATTGAAATAATTGATCTGAAGGTGCGGTACAAGGAGAATCTTCCTGTGGTACTTCATGGAGTGTCATGCACATTTCCAGGCGGAAAAAAGATCGGAATAGTTGGACGTACCGGTAGTGGCAAATCAACTTTAATTCAGGCATTGTTTCGGTTGATTGAACCATCTGATGGGAGGATACTTATAGACAACATTGATATTTTACATATTGGTCTTCATGATCTTAGGAGTCATCTAAGTATCATACCACAAGATCCAACCTTATTTGAAGGGACCATCCGTGGCAATCTTGATCCTCTTGATGAGCACTCTGATCAACACATCTGGGAGGCATTGGACAAGTCTCAACTTGGAGATATTATCCGTGAAAAGGACCAAAAGCTTGACACACCAGTGCTGGAAAATGGAGACAATTGGAGCGTAGGACAGCGGCAACTTGTTTCCCTAGGCCGAGCTCTTCTGAAGCAATCAAAAATACTTGTACTCGATGAAGCAACAGCATCAGTTGATACTGCCACGGATAATCTTATCCAGAAGATTATCCGTGACGAGTTTAAAGATTGTACTGTCTGCACCATTGCGCATCGCATTCCAACCGTTATAGACAGTGATCTTGTTCTAGTACTTAGTGATGGTGTGTCACTGCATTGCCATACACATTATATTATTTGTTCTGTGCTTGCTAATAAAGTTATTCTTCACACAGGTAGAGTTGCAGAATTCGACATTCCATCGCGACTATTAGAGGATAAAACCTCCATGTTTTTGAAGTTGGTGGCGGAGTATTCGTCAAGATCAAGTGGCATCCCAGCAGGATAG 4656 0.4248 MSTTLPPSSSSVGSSNTLLNEILSLPVLELVATCANLALLLVFLIVIFSRKVLGNVGSVRYDNKDDIASNGGAVSPRVVDAQTHQVRIGTWFKLSVLSCLYVLLVQLVVLGFDAVALIQGKGNLSVILLPVSQGLSWIVLSFLALNCKAQRLDRFPFLLRVWWSVSFVICLCTLYVDGRGLWDEGYKHLQSHVVANFAATPALAFLCIVAARGATGIEVCGDSDFREPLLAEEESGCVKVTPYSDAGIFSLATLSWLNPILSLGARRPLELKDIPLVARKDRAKTNYKILNSNWERLKAENSSGQPSLAWALLRSFWKEAAWNAIFAGLNTLVSYVGPYMVSYFVDYLSGKQSYPNEGYVLAGIFFVAKLVETFTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLALLILYKNVGIACIATLIATIISIVVTVPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYQIKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATCILLGGELTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSIDRISCFLLEEELQEDATIVLPHGISNVAVEIKDGIFCWDPSSSSRPTLSGIHMKAEKGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGLSAYVSQSAWIQSGNIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYILTALANKTVIYVTHQVEFLPAADLILVLKEGCIIQAGKYDDLLQAGTDFNALVSAHHEAIEAMEIPSFSSEDSEEHLSLNALVISSKKSICSTNDIDNLAKELQEGSSNSDQKAIKEKKKTKRSRKKQLVQEEERVRGRISMKVYLSYMAAAYKGLLIPLIIMAQTFFQFLQIASNWWMAWANPQTEGDLPKVSPTELLVVYMALAFGSSCFIFVRAILVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASTXIQLIGIVGVMTEVTWQVLLLVIPMGVACLWMQKYYMASSRELVRIVSIQKSPXINLFAESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDFRPPPSWPENGTIEIIDLKVRYKENLPVVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPSDGRILIDNIDILHIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLDEHSDQHIWEALDKSQLGDIIREKDQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRDEFKDCTVCTIAHRIPTVIDSDLVLVLSDGVSLHCHTHYIICSVLANKVILHTGRVAEFDIPSRLLEDKTSMFLKLVAEYSSRSSGIPAG* 1552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0316 1551 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 82 1549 - -
Amo06g0316 1551 Pfam ABC transporter 1298 1446 IPR003439 GO:0005524
Amo06g0316 1551 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 324 601 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0316 1551 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 82 1549 - -
Amo06g0316 1551 CDD ABC_6TM_ABCC_D2 962 1256 IPR044726 GO:0140359
Amo06g0316 1551 ProSitePatterns ABC transporters family signature. 761 775 IPR017871 GO:0005524
Amo06g0316 1551 Pfam ABC transporter transmembrane region 971 1206 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0316 1551 Pfam ABC transporter transmembrane region 325 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0316 1551 Gene3D - 1264 1540 IPR027417 -
Amo06g0316 1551 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
Amo06g0316 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 631 858 IPR027417 -
Amo06g0316 1551 Gene3D ABC transporter type 1, transmembrane domain 294 617 IPR036640 GO:0005524|GO:0016021
Amo06g0316 1551 Gene3D ABC transporter type 1, transmembrane domain 923 1262 IPR036640 GO:0005524|GO:0016021
Amo06g0316 1551 CDD ABCC_MRP_domain2 1279 1491 - -
Amo06g0316 1551 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 964 1234 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0316 1551 SUPERFAMILY ABC transporter transmembrane region 309 615 IPR036640 GO:0005524|GO:0016021
Amo06g0316 1551 SMART AAA_5 1307 1492 IPR003593 -
Amo06g0316 1551 SMART AAA_5 663 844 IPR003593 -
Amo06g0316 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1272 1499 IPR027417 -
Amo06g0316 1551 CDD ABCC_MRP_domain1 635 835 - -
Amo06g0316 1551 Gene3D - 618 877 IPR027417 -
Amo06g0316 1551 Pfam ABC transporter 654 788 IPR003439 GO:0005524
Amo06g0316 1551 Coils Coil 919 939 - -
Amo06g0316 1551 MobiDBLite consensus disorder prediction 911 932 - -
Amo06g0316 1551 Coils Coil 280 300 - -
Amo06g0316 1551 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1281 1539 IPR003439 GO:0005524
Amo06g0316 1551 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 859 IPR003439 GO:0005524
Amo06g0316 1551 SUPERFAMILY ABC transporter transmembrane region 962 1261 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0316 Amo-Chr6 4605693 4613696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0316 635 852 Calmodulin-binding Proteins AT2G36910 31.197 8.72e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0316 - - gmx:100790550 2506.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1535 16 28383979 28391325 Amo06g0316 06 4605693 4613696 hybridization
Amo06g0316 06 4605693 4613696 Amo12g0871 12 19203501 19211517 PCT
Amo12g3141 12 119974047 119982503 Amo06g0316 06 4605693 4613696 PCT
Amo12g0871 12 19203501 19211517 Amo06g0316 06 4605693 4613696 PCT