Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0307 ATGGCGCCAAATCCAAAGGTGGTAGCAGCCTATCGTGCAATGGCAAATCTTGGGATTCATGAATCAAAAGTGAAGCCAGTACTAAAGAAGCTCCTTAAGTTGTATGATAAAAACTGGGAGCTTATTGAAGAAGAGAACTATAGAGCTCTGGCAGATGCAATATTTGAGGAGGAGGAAAATCCGGTGCCGGAGCAAGAGCAGGAAAAGAAAAACAAGAGAGTTGATGAAGCAGAGTTAGATGATGAAGTGCAAGATCAGCCACTGCGACCTAAAAAGAGGTTGCGCTTGAGAGGTCCAGAGTTTCAGTCTTCAAATAATCAGATTAGCTGTGGTCCCAGTTCAGCTGCTTTTCCATTGAAAACTCCTAAATTAGAAGATGACACAGTACCTGGAAATGGTTCTATACTGCATGCTCAAAGTGCTGCAGCATTATCTGATGGAAATGGAATGATTGAAGCTCATCAAGTTCATTCACAAGATGACATTATTGACAAGGGAAAGAAACCTGTATCACCTCAAGTTACTCCCAGAGGAAGAAGATCTACATCGGATGGAGTGCCACCAGCAGTACTACCTAAAGAACCAGCAGTTGAACCGCTGAGCACTTTGTCTCCAAGAAGCAAAATGGCCCATCCTCTTGTATGGATCAAGCCCAAGGACGAGCCAATTGATGACGCACGAGATAATGAGGCTCCCATTTCAATGATTCTTCCTGAACCATCTAGTGGAAAGGATTCTTCAATGATGAATGGTGCAGCTGGACAGCAAGATTGTGACGACACTGTGGCATCACATTGCTTAAATGATGAAGTTGCTGGTGAAGATAACCTTCGCTCTTCAAATGAAGATGCCCCTTCTACTGTAGAGATAGGCTCATCACCTGTACAAGAGGAAGGATCTGCAAAGATAACACCAAACATCAGCATGCCAAAGGAATCTGAGTCACATGATGCTCTGGTTGCCGGAGGAAATGAAGATCTAGTTACACCTTGCATTTCAAATGGATCTGCCAATGTTAATTCTCATTCTTCCTTGCCCAATACTGAAATTCCAGTATCTCTGCCCTGCTCGTGTGGTCTGGATGACACTTCACCAGTTCCCCAGGAGGTTGGAAATAATGATTGCTTAGCAAGTGATGATGGAAGGGAGCTAGTGGATCCTATATCTAATAATTCTCATAGCTTAGTTACTGTTCCAAAGAATCAGCTTACTACTAATGCCATATTGACTGTTCACGATGTTAATGACATATCAAAGGGTGAAGAAAAAGTGAAAATTTCATGGGTCAATAACATTACTGATGATTTCCCACCATCCTTTCATTACATACCCCGAAACCTTGTATTCCAAAATGCTTATGTTAGTATTTCTCTGTCTCGTATTGGGAATGAAGATTGCTGTTCTACTTGCATAGGCAATTGTGTCTTGTCTTCTGAATCATGTTCTTGTGCGAATAAAACTGGAGGTGGATTTGCCTACACTGCACAAGGCCTACTGAAGGAAGAGTTCTTGGATGAGTGCATTGTCATCAGCTGCAACCCTAAAAATTGTTTCTATTGTGAAGACTGCCCAGTTGAAAGATCAAAGAATGATGATTGTTCAGAACCATGTAAAGGACACTTAAGGAGGAAGTTTATTAAGGAATGCTGGAGTAAATGTGGCTGTGGTAAAAAATGTGGCAATCGGGTTGTCCAGCGAGGAATAACTTGCAACTTGCAGGTGTTTTTAACTTCTGAAGGAAAAGGTTGGGGTCTTCGGACGTTAGAGGACCTTCCCAAAGGGGCATTTGTGTGCGAGTTTGTTGGAGAAATTCTAACCGTCAAAGAATTGCATGAGAGGAGCCTAAAATATCCCAAAAATAGGAAATATACATACCCAATTCTATTGGATGCAGATTGGGAATCAGGAGGTGTGGGGGATAAAGAAGCACTTTGCTTGTATGCAGCATCTTATGGAAATGCTGCTAGGTTTATTAATCACAGATGTTTAGATGCTAACTTGATTGAGATCCCCGTTGAAATTGAGGGCCCAGATCATCACTACTATCATCTTGCCTTATTCACATCCAGAGAAATAGCAGCACAGGAGGAGCTCACTTGGGATTATGGCATCAACTTCGATGATCATGATCAGCCTGTTGAGCTGTTTGGGTGCAAATGTGGAAGTAAATTCTGCAGGAATATGAAGCGATCAAGTAGATCCGCAAGATCGTTGGCTGCAAGATGA 2226 0.4223 MAPNPKVVAAYRAMANLGIHESKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEEEENPVPEQEQEKKNKRVDEAELDDEVQDQPLRPKKRLRLRGPEFQSSNNQISCGPSSAAFPLKTPKLEDDTVPGNGSILHAQSAAALSDGNGMIEAHQVHSQDDIIDKGKKPVSPQVTPRGRRSTSDGVPPAVLPKEPAVEPLSTLSPRSKMAHPLVWIKPKDEPIDDARDNEAPISMILPEPSSGKDSSMMNGAAGQQDCDDTVASHCLNDEVAGEDNLRSSNEDAPSTVEIGSSPVQEEGSAKITPNISMPKESESHDALVAGGNEDLVTPCISNGSANVNSHSSLPNTEIPVSLPCSCGLDDTSPVPQEVGNNDCLASDDGRELVDPISNNSHSLVTVPKNQLTTNAILTVHDVNDISKGEEKVKISWVNNITDDFPPSFHYIPRNLVFQNAYVSISLSRIGNEDCCSTCIGNCVLSSESCSCANKTGGGFAYTAQGLLKEEFLDECIVISCNPKNCFYCEDCPVERSKNDDCSEPCKGHLRRKFIKECWSKCGCGKKCGNRVVQRGITCNLQVFLTSEGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERSLKYPKNRKYTYPILLDADWESGGVGDKEALCLYAASYGNAARFINHRCLDANLIEIPVEIEGPDHHYYHLALFTSREIAAQEELTWDYGINFDDHDQPVELFGCKCGSKFCRNMKRSSRSARSLAAR* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0307 741 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 741 IPR025776 -
Amo06g0307 741 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 738 - -
Amo06g0307 741 SUPERFAMILY SET domain 424 726 IPR046341 -
Amo06g0307 741 MobiDBLite consensus disorder prediction 158 195 - -
Amo06g0307 741 MobiDBLite consensus disorder prediction 63 98 - -
Amo06g0307 741 ProSiteProfiles SET domain profile. 570 703 IPR001214 GO:0005515
Amo06g0307 741 MobiDBLite consensus disorder prediction 272 309 - -
Amo06g0307 741 MobiDBLite consensus disorder prediction 57 121 - -
Amo06g0307 741 SMART set_7 570 709 IPR001214 GO:0005515
Amo06g0307 741 SMART preset_2 414 554 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo06g0307 741 Pfam Pre-SET motif 417 562 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo06g0307 741 Gene3D - 1 60 IPR043017 -
Amo06g0307 741 MobiDBLite consensus disorder prediction 279 309 - -
Amo06g0307 741 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 738 - -
Amo06g0307 741 CDD SET_SETDB-like 438 703 - -
Amo06g0307 741 Pfam SET domain 582 703 IPR001214 GO:0005515
Amo06g0307 741 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Amo06g0307 741 MobiDBLite consensus disorder prediction 99 114 - -
Amo06g0307 741 ProSiteProfiles Pre-SET domain profile. 466 567 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo06g0307 741 Gene3D SET domain 405 729 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0307 Amo-Chr6 4466056 4473946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0307 400 726 Su(var)3-9 homologs AT1G73100 30.145 6.93e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo06g0307 Pre-SET 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0307 - - gmx:100788602 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1512 16 27747671 27755444 Amo06g0307 06 4466056 4473946 hybridization
Amo19g1942 19 65280051 65299785 Amo06g0307 06 4466056 4473946 PCT
Amo09g1384 09 42886666 42899835 Amo06g0307 06 4466056 4473946 PCT