Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0301 ATGACAACCTTCCAACAAACACATTCTATTGTCTTTCTGGTATTTCTTGTATCTCTACTTACAATAAATACCTCAGTCACAGCATCACCAATAACAGAAGCACAAGAACTTGTTAAATGGAAAAATACTCTATCCCTTCCTCTTCCTTCTTCACTCAAATCATGGTCACTCAACAACTTTGACAAACTTTGCAGTTGGGAAGCCATTCTTTGTGACAAAACAAACACAACAATCACACACATAAACCTCTCTGATTTCTACCTAAATGGTACTCTTGATTCCTTGGCTTTTTCTTCTCTTCCAAACCTCACCTATTTCAACCTCAACGGCAACAACTTCAATGGATCATTGCCATCTTCCATTGGAAGACTCTCCAAGCTCACTTTCTTAGACTTGGGAAACAATTTTTTTGCAGACACTTTGCCTTCAGAGCTAGGCCAGTTAAGGGAACTTCAATATCTCAGTTTTCACAACAACAATTTCATTGGCATCATTCCCTATCATCTCACAAGTCTCCCCAAGGTATGGTACCTTGACTTTGGATCAAACTACTTTGAATCTCAAAACTGGTCTCAATATTCATGCTTGCCTTCACTAACACACCTTGACTTGGATCTCAATTCATTCACCCCTGAATTTCCAAGTTTTGTGCTCAACTGCCACAACTTAACTTTCCTTGACCTCTCCCAAAACACTTTCAATGCCACAATACCAGAATCCATGTTCACCAATTTGACCAAGCTTGAGTACCTTAACCTTACAAACTGTGGTATGCAAGGACCACTATCATCCAATTTGTCCAAGCTCTCAAATCTCAAAGAACTTCGAATGGGAAACAACATGTTTACTGGTCCTATTCCGGAAAATATAGGATTGATATCTGGCCTTCAGTTTCTTGAATTGAATAACATTTCAGCCCATGGGGCAATCCCTGCATCCTTAGGCCAACTCAAAGAACTCCAGCATCTTGATCTTAGCACTAACTTTTTGAATTCTTCAATCCCTTTTGAACTTGGCCTATGCAGCAATCTAACTTTTCTTGCTTTAGCAGGCAATACTTTGACTGGTTCTTTACCTTTATCATTATCCAATCTGACCAAACTTTTACATTTGGGATTATCTGAAAATTCTTTTTCTGGTCAAATTTCTGCTTCATTGATCTCAAACTGGACCAAGTTGATATCTCTGCAACTCCAAAACAATAATTTAACAGGAAGAGTTCCTCCAGAAATTGGCTTGCTCACAAAAATCAATTACCTTTTCTTGTACAATAACACATTGTCAGGTCCAATACCTGTGGAGATTGGAAACCTGAAGGAAATGATACAATTAGACCTTTCAGATAACCATTTCTCTGGTAAGATTCCTCTAACTATTTGGAATCTTACAAATATTACAATCTTGAACCTTTTCTTCAATCAGTTATCAGGGACTATTCCCAAGGATATTGGAAACTTAAAATCACTACAATATTTTGATGTCAACAACAACAAATTAAGTGGAGAGTTACCAGATACWATAGCTCAACTGCCTGCTCTAGTGCATTTTTCTGTGTTTAGCAATAAATTCTCGGGTAACATTACTCAAGAATTTGGAAAGTATAGTCCTRATTTGGATACAATCTACCTTTCAAACAACAGTTTCTCAGGAGAATTGCCACCTGACTTGTGTAATGGTACTGTGTTAACTATTTTGGCAGCCAATAATAACAGTTTTTCTGGATCTTTGCCAAAGTCTTTGAGAAATTGTTCAAGACTAGTTAAACTTCGGCTTGATGTTAATCAATTCTCTGGTAACATCACAGAAGCATTTGGGGTTTATCCAAGTCTTGAGTTTATCTCACTCAGTGAAAATCTTCTTGTTGGTGAGCTATCTCCAAAGTGGGGTGAATGTGTCAACCTGACCAGGATGGAAATGAGTAAAAATAAACTTTCAGGAACAATCCCCTCCGAGTTGAGTAAGCTGAATGAACTGGCATATCTGCGTTTGGACTCCAATGAATTCACAGGCAATATCCCACCTGAAATGGGGAAACTAACCAAGCTCTTCATGTTCAACATGAGCAAGAATCATATGTCTGGAGAAGTCCCTCAAAGTATTGGCAGTTTGGCTAATCTTAATTTTCTTGATTTTTCAGACAACAATTTTATTGGAAGCATTCCTAAAGAGCTTGGTAATCTTCAAAGATTAGTAAGCCTGAATTTAAGCCATAATAATCAATCAGGGGAGATGCCATCCGAACTTGGCAATCTGTTATCACTCCAGATCCTCTTGGATCTCAGCAGCAACTCTCTTACAGGAGAAATTCCTCAGAACCTTGAAAAGCTTGCAAAATTGGAGGTTCTCAATGTCTCACACAACTATTTATCTAGCAGAATCCCAGAGTCTTTGGACAACATGCTCAGCCTTGATTCCGTTGACTTTTCTTACAATAACTTGACTGGTCCAATCCCAAGTGATGGTATTTTCCAAACAGCAAATGCTAAATATGAAGGAAACCCAGGTCTGTGTGGTGAGGTAAAAGGTTTACATCCATGCATTACAAACAGAAACAAATCTGGAGGAGTTAACAAAAGGGTCCTTCTTGGTGTTCTTATACCAATTTGTGGATTACTATTGGGACTGATATGTGTTGCAATCCTTGTATGGCGACAACACCCCAAACTCAATGACGAAGAGTCCGAAAGCACTCAAACTAGTGATAAAGCTCTTAGCATTGTGTGGGGAAGGGATGGACAATTCACATTCTCTGAACTTGCCAAGGCCACTGATGAGTTCAATGATAGGCATTGCATTGGAAAGGGAGGATTTGGAAGTGTTTACAAAGCAGAATTAGGCACAGGTCAAGTTGTTGCTGTCAAAAGACTCAATATCTCGGACTCTAATGACATTTCACCAGTAAACCGGCGGAGCTTTGAGAATGAGATAAGAACACTGACAGGTGTGAGACACCGGAACATAATCAAACTATATGGTTTTTGCTCAAGGAGGAAACAGATGTTCTTGGTTTATGAATATGTAGAGAAAGGAAGCTTGAGAAAAGTGCTGTATGGAGAGGAAGGAATATTGGAGCTAAGTTGGAAGAAGAGGATGAAAGTTGTGCAGGGAATAGCACATGCACTTGCCTACTTACACACTGATTGCTATCCACCAGTTGTGCACAGAGATGTAACAATGAATAACATATTATTAGACTTGGACTTTGAACCTCGTCTTGCAGATTTCGGCACTGCAAAGCTTTTAAGCTCTGAGGCTTCAACATGGACCTCAGTGGCTGGTTCTTATGGCTACATGGCTCCAGAACTAGCCCAAACAATGAGGGTCAGTGACAAGTGTGATGTGTATAGTTTCGGAGTGGTGGTGTTGGAGATAATAATGGGAAAACACCCTGGAGAACTGTTGACAAACATGTCCTTGTCATGCATGGAAGATTCAGAGGTGCTTCTGAGGGATGTGTTAGACCAGAGGCTGCCACCTCCAACAGGGGAATTAGCTGAGGCAGTGGTGTTCACAGTGAGCATAGCTTTGGCATGCACACGTTTGGCTCCAGAGTCCAGACCCACAATGCGTTCTGTGGCACAAGACCTATCAGCTACTACACAGGCTTGTCTTTTGGAGCCATTTGAGATGATAACAATGAGCAAGCTTACAGGTTTCAAAAATAATAACTAG 3672 0.3984 MTTFQQTHSIVFLVFLVSLLTINTSVTASPITEAQELVKWKNTLSLPLPSSLKSWSLNNFDKLCSWEAILCDKTNTTITHINLSDFYLNGTLDSLAFSSLPNLTYFNLNGNNFNGSLPSSIGRLSKLTFLDLGNNFFADTLPSELGQLRELQYLSFHNNNFIGIIPYHLTSLPKVWYLDFGSNYFESQNWSQYSCLPSLTHLDLDLNSFTPEFPSFVLNCHNLTFLDLSQNTFNATIPESMFTNLTKLEYLNLTNCGMQGPLSSNLSKLSNLKELRMGNNMFTGPIPENIGLISGLQFLELNNISAHGAIPASLGQLKELQHLDLSTNFLNSSIPFELGLCSNLTFLALAGNTLTGSLPLSLSNLTKLLHLGLSENSFSGQISASLISNWTKLISLQLQNNNLTGRVPPEIGLLTKINYLFLYNNTLSGPIPVEIGNLKEMIQLDLSDNHFSGKIPLTIWNLTNITILNLFFNQLSGTIPKDIGNLKSLQYFDVNNNKLSGELPDTIAQLPALVHFSVFSNKFSGNITQEFGKYSPXLDTIYLSNNSFSGELPPDLCNGTVLTILAANNNSFSGSLPKSLRNCSRLVKLRLDVNQFSGNITEAFGVYPSLEFISLSENLLVGELSPKWGECVNLTRMEMSKNKLSGTIPSELSKLNELAYLRLDSNEFTGNIPPEMGKLTKLFMFNMSKNHMSGEVPQSIGSLANLNFLDFSDNNFIGSIPKELGNLQRLVSLNLSHNNQSGEMPSELGNLLSLQILLDLSSNSLTGEIPQNLEKLAKLEVLNVSHNYLSSRIPESLDNMLSLDSVDFSYNNLTGPIPSDGIFQTANAKYEGNPGLCGEVKGLHPCITNRNKSGGVNKRVLLGVLIPICGLLLGLICVAILVWRQHPKLNDEESESTQTSDKALSIVWGRDGQFTFSELAKATDEFNDRHCIGKGGFGSVYKAELGTGQVVAVKRLNISDSNDISPVNRRSFENEIRTLTGVRHRNIIKLYGFCSRRKQMFLVYEYVEKGSLRKVLYGEEGILELSWKKRMKVVQGIAHALAYLHTDCYPPVVHRDVTMNNILLDLDFEPRLADFGTAKLLSSEASTWTSVAGSYGYMAPELAQTMRVSDKCDVYSFGVVVLEIIMGKHPGELLTNMSLSCMEDSEVLLRDVLDQRLPPPTGELAEAVVFTVSIALACTRLAPESRPTMRSVAQDLSATTQACLLEPFEMITMSKLTGFKNNN* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0301 1223 Pfam Protein kinase domain 928 1194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0301 1223 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1052 1064 IPR008266 GO:0004672|GO:0006468
Amo06g0301 1223 SUPERFAMILY RNI-like 80 404 - -
Amo06g0301 1223 SUPERFAMILY L domain-like 536 826 - -
Amo06g0301 1223 SMART LRR_typ_2 221 244 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 655 679 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 317 341 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 486 510 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 269 293 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 365 389 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 196 220 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 100 123 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 703 727 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 776 800 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 462 485 IPR003591 -
Amo06g0301 1223 SMART LRR_typ_2 124 148 IPR003591 -
Amo06g0301 1223 Gene3D Ribonuclease Inhibitor 191 287 IPR032675 -
Amo06g0301 1223 Gene3D Ribonuclease Inhibitor 31 190 IPR032675 -
Amo06g0301 1223 Gene3D Ribonuclease Inhibitor 388 506 IPR032675 -
Amo06g0301 1223 Gene3D Transferase(Phosphotransferase) domain 1 1007 1206 - -
Amo06g0301 1223 Gene3D Phosphorylase Kinase; domain 1 888 1006 - -
Amo06g0301 1223 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 126 1216 - -
Amo06g0301 1223 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 12 125 - -
Amo06g0301 1223 Gene3D Ribonuclease Inhibitor 288 387 IPR032675 -
Amo06g0301 1223 SUPERFAMILY Protein kinase-like (PK-like) 909 1196 IPR011009 -
Amo06g0301 1223 ProSiteProfiles Protein kinase domain profile. 926 1209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g0301 1223 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 126 1216 - -
Amo06g0301 1223 ProSitePatterns Protein kinases ATP-binding region signature. 932 954 IPR017441 GO:0005524
Amo06g0301 1223 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 12 125 - -
Amo06g0301 1223 Gene3D Ribonuclease Inhibitor 519 849 IPR032675 -
Amo06g0301 1223 SUPERFAMILY L domain-like 341 526 - -
Amo06g0301 1223 CDD STKc_IRAK 932 1196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0301 Amo-Chr6 4416107 4420157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0301 1 671 Receptor kinase-like Gene Family AT4G08850 30.906 8.51e-78 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo06g0301 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0301 - - gmx:100809137 1639.78