Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0296 ATGAAATCTGAATTCTCAAGTCTTTCCCTTCTCTCTCTTTCACGCACAAAAAACTCAACAGAACAAACCGCCAGAATGGATGCTTCTAGAACTTCAAGCAGCACCGGCAACAAGAGTAACAGCACCAAGCTGCTTAATCCATGGATGCTCCATTTCCAGAAGCTCGCTCTTGAACTCAAGTGCCCTCTCTGTTTGAGCTTGTTCAAGAGGCCGGTTTTGCTACCCTGCAACCACTTATTCTGCAATTCGTGTTTGGCGGATTTCACAACATCTGGTTCCGAATGTGTTGTCTGCAATGCGAAGTATGCTCAATCAGATATAAGGCATGTGCCTTTTGTGGAAAACGTGGTAGGGATTTATAGGAGCTTGGAGGCAACCTTTTCTGCTAGTTTGTTTACGCAACATTCTTCTGATGTGAGGGTTTTGGAGCCATGTCAAGGGTTACAAAATTCAGTTCACAGGAGCAAGGATACTGATAATGTTGGGGCTGGCAAGAATCAGAAACGGAAGATGAGTGGTATTGCGGTGCATGATAAGGGCGAGGAGATTGAGATGTATTCTGGGGGGCAGGTTGAGAATCCAAGGCGGTCTTCCCAGATGAAAATTGAGGGTCGTGAAGACTCTGGGGTTGTTGAAATGGATGTGAATCAAGGGACGCAATCAGCACCAGCTAGTCCACCATTTTGTGACACAAAGGGCTCAGAGAATGACTGCAGTGATCAAGATAGTGAGCATCTTTTGCCTTCTGGGGCATTGGAAAATTCCTCATCGAAAAGAGCAAGTACAGGAAATGGAAATTTGAAGGAAAGAATGACACAACTGAGGTCTGAAAGTTCAGCCTCTGAAACGGAGGGTCTTACAAGAGAGCTCAAGAGGCAGAAAAATCTTACCCACGGTAATGATCAGCTCAGAACTGAAAAGGACCCTGGTGCCGTGATGCTTGCTAATGTAGATGACTCTTATATAAGTACATGTTCATTTTGCCAGTCCTCAAAAATCTCAGAGGCTACTGGACCAATGCTGCATTGTGCAAATGGGAATTTGGTTATTGGTGATGCAGCAAAGCAACCAAATGTCATCCATGTACACAAAGTTTGCAGTGATTGGGCACCACAAGTTTACTTTGTTGGTGAAACTCTTAAGAATTTGAAGACAGAACTTTCAAGGGCAGCAAAGCTTAAATGCAGCAAATGTGGCCTAAAGGGAGCTGCACTTGGATGCTATGTCAAATCCTGCAGAAGAACTTATCATGCTCCTTGTGCAATGGATGTCTCAAATTGCCGTTGGGATTATGAGGGTTATCTTATGCTTTGTCCTGGGCATTCTCATGTGAAATTTCCTAGTGAGAAATCCAAGTCTAGGAAACAAACAACTGATAAGCATCCCACTTCATCTCACCTGCCATCTCAATGTTCAAGCGCTCTGGGATGTTCAAAGGATGAAGATAAAAAATTGCTTTTTTGTGGATCTGCTTTATCAACTGAGGAAAAGATACTTCTGATAAATTTTGCAAGCAAGATTGGTGCTAAAGTTACCAAGATTTGGACTTCAGAAGTCACCCATGTGATTGCAGCTACTGATGAAAATGGAGCATGCTCTAGGACACTAAAAGTTCTTATGGCAATTCTAAATGGAAAATGGGTTCTCAAAATGGATTGGGTAAAAGCAAGCATGGAAGAGATGAATCCTCTTGGAGAAGAACCATACGAGATCACACTTGACAACCAAGGGTGTCACGGTGGCCCAAAAGCTGGCAGACTCAGGGCAATGGTCAATGAGCCAAAGCTATTTACTGGCTTAAAGTTTTATTTGTCCGGAGATTATGTGACAACATATAAGAAAGATATTGAAGAATTAATTGAAGTGGGAGGAGGTGCTGTTTTGAGAAGCAAAGAAGAATTGGAAGCAAAAAAGCTTGAATTCGAAGGGGTTCCTTCGAAGTTCCTTGTTGTTTACAACCTTGATCCTCCACAGGGATGCAAGTTAGGAGAGGAAGTTTCGATTATTTGGCAAAGAATGAATGATGCAGAGGAACTAGCATCTAGTACTGGTTCTGAAGTCATTGGTCACACGTGGATTCTGGAGTCAATTGCAGCATGTAAACTTCAGCCTTTTGTTATCTAA 2124 0.428 MKSEFSSLSLLSLSRTKNSTEQTARMDASRTSSSTGNKSNSTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADFTTSGSECVVCNAKYAQSDIRHVPFVENVVGIYRSLEATFSASLFTQHSSDVRVLEPCQGLQNSVHRSKDTDNVGAGKNQKRKMSGIAVHDKGEEIEMYSGGQVENPRRSSQMKIEGREDSGVVEMDVNQGTQSAPASPPFCDTKGSENDCSDQDSEHLLPSGALENSSSKRASTGNGNLKERMTQLRSESSASETEGLTRELKRQKNLTHGNDQLRTEKDPGAVMLANVDDSYISTCSFCQSSKISEATGPMLHCANGNLVIGDAAKQPNVIHVHKVCSDWAPQVYFVGETLKNLKTELSRAAKLKCSKCGLKGAALGCYVKSCRRTYHAPCAMDVSNCRWDYEGYLMLCPGHSHVKFPSEKSKSRKQTTDKHPTSSHLPSQCSSALGCSKDEDKKLLFCGSALSTEEKILLINFASKIGAKVTKIWTSEVTHVIAATDENGACSRTLKVLMAILNGKWVLKMDWVKASMEEMNPLGEEPYEITLDNQGCHGGPKAGRLRAMVNEPKLFTGLKFYLSGDYVTTYKKDIEELIEVGGGAVLRSKEELEAKKLEFEGVPSKFLVVYNLDPPQGCKLGEEVSIIWQRMNDAEELASSTGSEVIGHTWILESIAACKLQPFVI* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0296 707 Gene3D BRCT domain 594 700 IPR036420 -
Amo06g0296 707 ProSiteProfiles BRCT domain profile. 592 697 IPR001357 -
Amo06g0296 707 Pfam BRCT domain, a BRCA1 C-terminus domain 594 704 IPR001357 -
Amo06g0296 707 SUPERFAMILY BRCT domain 485 572 IPR036420 -
Amo06g0296 707 MobiDBLite consensus disorder prediction 16 40 - -
Amo06g0296 707 MobiDBLite consensus disorder prediction 217 306 - -
Amo06g0296 707 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 42 705 IPR031099 GO:0006281|GO:0006974
Amo06g0296 707 CDD BRCT_Bard1_rpt1 485 560 - -
Amo06g0296 707 ProSiteProfiles BRCT domain profile. 481 571 IPR001357 -
Amo06g0296 707 MobiDBLite consensus disorder prediction 248 281 - -
Amo06g0296 707 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 42 705 - -
Amo06g0296 707 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Amo06g0296 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 131 IPR013083 -
Amo06g0296 707 Gene3D BRCT domain 481 587 IPR036420 -
Amo06g0296 707 Pfam BRCA1 C Terminus (BRCT) domain 484 557 IPR001357 -
Amo06g0296 707 Pfam PHD-like zinc-binding domain 363 441 - -
Amo06g0296 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 444 IPR013083 -
Amo06g0296 707 SMART BRCT_7 594 700 IPR001357 -
Amo06g0296 707 SMART BRCT_7 477 561 IPR001357 -
Amo06g0296 707 SUPERFAMILY RING/U-box 58 121 - -
Amo06g0296 707 ProSiteProfiles Zinc finger RING-type profile. 61 99 IPR001841 -
Amo06g0296 707 MobiDBLite consensus disorder prediction 446 461 - -
Amo06g0296 707 SMART ring_2 61 98 IPR001841 -
Amo06g0296 707 MobiDBLite consensus disorder prediction 282 305 - -
Amo06g0296 707 MobiDBLite consensus disorder prediction 152 172 - -
Amo06g0296 707 MobiDBLite consensus disorder prediction 446 471 - -
Amo06g0296 707 Pfam Zinc finger, C3HC4 type (RING finger) 58 102 - -
Amo06g0296 707 ProSiteProfiles Extended PHD (ePHD) domain profile. 322 442 IPR034732 -
Amo06g0296 707 SUPERFAMILY BRCT domain 596 704 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0296 515 628 Core DNA Replication Machinery Family AT4G02110 30.833 2.42e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0296 K10683 - gmx:100784883 966.837