Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0293 ATGGCAGAAGCATGGTGTAACGGCGGCGGAAGCACAGCAAAACAGAAGAAAAACTCGCCAAAACAGGAGGAACCACAGCAAACAACGATAGAACAGAAGTGTCGCGATGACGTTGGAACAGCATGGACGGAGGTGGTGGCTGGACAAGTTGAAGAACAAAGACGAGGCCAAAGAGCTGAGGGAATTAGGAAGTGGAAGCTGCGTTGGGGAGGAAGAGGAGGAGAGTACGCTGAAGAGGGAGGAATTATGCACTTAATTGCCAGCTCATCACACCATGAAAAACGCACACCGCCACGTGGCAAGCACTTTACCTCCCCGCCTTTTTCACCATTCAGCTTTTTTGGGTCATCGTCGTCTTTTGACTTTAACTTGATTTACAATTGTCAAAGTGTCGATCATTTAATGGAAACGTGCACCACTCTTCTTGCTGTAGAAGCACCAGAGTATATTGATTCTAGAGATCATGCTTGGAACTTGGAATTGGAATTATGGCATGATCTTGCTTATGTCTATATATCTCTGTCATGTTGGCATGATGCAGAGATGTGTCTTTCTAGATCTAAAGCCATAAAACCATACACTGCATCAAGGTTGCATGCACTGGGTACAATGCACGAGGCAAAGGGCCTTTACAAGGAGGCTCTAAAAGCATTTCGAGATGCTTTGGATATCGATTCGGGACATGTCCCTAGCTTGATATCCGCTGCTGTGGTTCTTAGACAGTTCAATGGTCAGTCAAATGCTGCCATCAGAAGCTTTCTGATGGACGCACTACGGCATGACAGGATGAACGCTTCTGCATGGTACAATCTTGGCATTCTTCACAAGGCCGAGAATAAAATATCAGAAGCTGCAGAATGTTTTGAGGCAGCAAACTCCCTAGAAGAATCAGCACCAGTTGAACCATTCAGATGA 915 0.4579 MAEAWCNGGGSTAKQKKNSPKQEEPQQTTIEQKCRDDVGTAWTEVVAGQVEEQRRGQRAEGIRKWKLRWGGRGGEYAEEGGIMHLIASSSHHEKRTPPRGKHFTSPPFSPFSFFGSSSSFDFNLIYNCQSVDHLMETCTTLLAVEAPEYIDSRDHAWNLELELWHDLAYVYISLSCWHDAEMCLSRSKAIKPYTASRLHALGTMHEAKGLYKEALKAFRDALDIDSGHVPSLISAAVVLRQFNGQSNAAIRSFLMDALRHDRMNASAWYNLGILHKAENKISEAAECFEAANSLEESAPVEPFR* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0293 304 MobiDBLite consensus disorder prediction 1 35 - -
Amo06g0293 304 ProSiteProfiles TPR repeat profile. 265 298 IPR019734 GO:0005515
Amo06g0293 304 Gene3D Tetratricopeptide repeat domain 137 300 IPR011990 GO:0005515
Amo06g0293 304 SMART tpr_5 265 298 IPR019734 GO:0005515
Amo06g0293 304 SMART tpr_5 161 194 IPR019734 GO:0005515
Amo06g0293 304 SMART tpr_5 195 228 IPR019734 GO:0005515
Amo06g0293 304 SUPERFAMILY TPR-like 161 295 IPR011990 GO:0005515
Amo06g0293 304 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Amo06g0293 304 MobiDBLite consensus disorder prediction 11 27 - -
Amo06g0293 304 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 149 304 - -
Amo06g0293 304 Pfam Tetratricopeptide repeat 265 296 IPR019734 GO:0005515
Amo06g0293 304 Pfam Tetratricopeptide repeat 197 226 IPR019734 GO:0005515
Amo06g0293 304 PANTHER PROTEIN NPG1 149 304 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0293 Amo-Chr6 4342864 4349363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0293 158 304 Calmodulin-binding Proteins AT4G28600 56.291 1.01e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0293 K21843 - gmx:100784353 253.832