Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0278 ATGAACTCAAAACCTGTATCAATGTATTGCCAAAGTGCAGAGCAGACACTTAAGTTGTTGAAGCCAATTATTGACACAACTGTTCATTCTGATATATCTGCTGATGAAGAGCTTAGAAAGTTATTTGAGGAACTTGGTCAGTCTGTTGATGAGTTGAGGGAGCTTTTCGAGAATTGGCATCCACTATCCAGTAAATTTTACTTTGTGATGCAAGCTGAACCGTTGATTATCAATATTTTGCAGAAGCTGAAGGCTTCACAGCAATGTCTACCTGATGATATGACATCAATCATTAAGGAAGCTATAAATGAACAACTGGAAGGCGAAGATTCCTTTAGTGGCGTGGATAATGCACAGCATGTGGATCCTGTAAGAATATCAGACGAAGAAAGTGTGGATTTAGTTTCCCAATCATCAACTTCACCATCTAGAAGGGAAGCTTCAAATGCCTTGAGATCAGAGCAATCTCAAAACCATAGACAGGTGGTTGAGGATAACAAGATCAGGATAGGGAGGGCCGGGGCTATTAAACCTCTGGTTGAGTTATTAAGCTGTGGCTGTTCTAGCAAATCTGGGCAGCAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATTTAAACATGGTACTCCAAGAAGGAGCTGTTCCACCATTAGTAGCTTTATCACCATCAGGCACCGCAAGGGCTAAAGAGAAGTTTTCTCTTTATCTTCTTTGTTTTGTTACAAAATGTGGTGACTGA 789 0.4132 MNSKPVSMYCQSAEQTLKLLKPIIDTTVHSDISADEELRKLFEELGQSVDELRELFENWHPLSSKFYFVMQAEPLIINILQKLKASQQCLPDDMTSIIKEAINEQLEGEDSFSGVDNAQHVDPVRISDEESVDLVSQSSTSPSRREASNALRSEQSQNHRQVVEDNKIRIGRAGAIKPLVELLSCGCSSKSGQQGGIPLLVEVVELGSTRGKENAAAALLHLNMVLQEGAVPPLVALSPSGTARAKEKFSLYLLCFVTKCGD* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0278 262 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 161 187 - -
Amo06g0278 262 PANTHER U BOX DOMAIN-CONTAINING 191 250 - -
Amo06g0278 262 Gene3D - 124 261 IPR011989 -
Amo06g0278 262 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 191 250 - -
Amo06g0278 262 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 96 - -
Amo06g0278 262 SUPERFAMILY ARM repeat 163 249 IPR016024 -
Amo06g0278 262 MobiDBLite consensus disorder prediction 129 162 - -
Amo06g0278 262 PANTHER U BOX DOMAIN-CONTAINING 161 187 - -
Amo06g0278 262 PANTHER U BOX DOMAIN-CONTAINING 8 96 - -
Amo06g0278 262 MobiDBLite consensus disorder prediction 131 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0278 Amo-Chr6 3800815 3802099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0278 162 261 U-box Gene Family AT2G23140 30.709 6.99e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0278 - - adu:107458158 200.29