Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0277 ATGGGGCTTCGAGACATAGGAGCATCACTTCCACCAGGGTTCAGATTCTACCCGAGTGATGAGGAATTGGTTTGCCATTATCTTTATAAGAAGATCACAAACCAGCAACTTCTTAAAGGCACTCTTATTGAGATTGATTTACACATATGCGAGCCATGGCAGCTTCCAGAGCTTCTACGATGGAATGGAGTAATGAAATACGTGGTATATGCAGAGGTGGCAAAGCTAAATGCAAATGAATGGTACTTCTTCAGCTTCAGAGACAGGAAATATGCGACGGGGTTCAGAACGAACAGAGCGACGACAAGTGGTTATTGGAAAGCAACGGGGAAGGATCGAACGGTGCAGGATCCACTTACGCAAGAGGTTGTAGGGATGCGGAAGACTCTGGTGTTCTACCGGAACAGAGCTCCCAATGGCATCAAAACTGGCTGGATCATGCATGAGTTTCGGTTGGAGACCCCACACATGCCCCCTAAGGAAGATTGGGTGTTGTGTAGAGTGTTCCACAAAAGCAAAGAAGAAAACAGTGGCAAACTTATCATGTATGATTCCATTTCCACACATCATGAATCATCAAACTCTATGGCATTGGTATCAACCCATCTTTTGAACCCCATCAACAACCATAATGCCATGAATAATTTCCTTCATCACTTCTCATCATCAAGGGATGATAGTCAAACAAATAACGCCAATAATAATAATAATAATAATAGTCCCAAGGGTTATGATGGATATGGCTTCATATGGGATCACATGGATCTTGAAGATCATAGTGTGCCCTCATCAGATTTCCAGGTCGACAATAATAATAATAATAATAATAGTCCCAAGGGTTATGATGGATATGGCTTCATATGGGATCACATGGATCTTGAAGATCATAGTGTGCCCTCATCAGATTTCCAGGTCGACAATAATAATAATAATAATAATATTGCATTGCTATAA 954 0.414 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNQQLLKGTLIEIDLHICEPWQLPELLRWNGVMKYVVYAEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVQDPLTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSGKLIMYDSISTHHESSNSMALVSTHLLNPINNHNAMNNFLHHFSSSRDDSQTNNANNNNNNNSPKGYDGYGFIWDHMDLEDHSVPSSDFQVDNNNNNNNSPKGYDGYGFIWDHMDLEDHSVPSSDFQVDNNNNNNNIALL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0277 317 Pfam No apical meristem (NAM) protein 11 152 IPR003441 GO:0003677|GO:0006355
Amo06g0277 317 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 263 - -
Amo06g0277 317 ProSiteProfiles NAC domain profile. 10 171 IPR003441 GO:0003677|GO:0006355
Amo06g0277 317 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 263 - -
Amo06g0277 317 Gene3D NAC domain 19 177 IPR036093 GO:0003677|GO:0006355
Amo06g0277 317 SUPERFAMILY NAC domain 8 171 IPR036093 GO:0003677|GO:0006355
Amo06g0277 317 MobiDBLite consensus disorder prediction 220 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0277 Amo-Chr6 3760339 3764186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0277 6 220 NAC Transcription Factor Family AT1G56010 46.696 7.65e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo06g0277 NAM 2.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0277 - - ahf:112754075 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1464 16 26594558 26596390 Amo06g0277 06 3760339 3764186 hybridization
Amo06g0277 06 3760339 3764186 Amo12g0739 12 15587849 15594524 PCT
Amo12g0739 12 15587849 15594524 Amo06g0277 06 3760339 3764186 PCT