Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0271 ATGCATATAGGTCAAACGAGTACAACTTCAGCGAAATGTCTCATCAACAGCATTTCACGATTCATTCATCTAGTTTCTTGCCATACGGTAAAGCCTACCCCCCTTAAGAAGAACTTTGATAATATGGTTAGTGTGTTGAAGCGTTTGAAACCTGTGCTCGATGATGTTGTGGATCACAATCTCCTTTTGGAGGAAAATCTGTATAGAGAATGCGAGGAATTGGATATGTTGGTTAATGAAGCTAAAGAGCTCATTGAAAAATGGGGCCCAAAGATGAGCAAGATTCGCAGCGTTCTTCGAAGTGGTGAATTGCTGATCAAGTTACAGAGTGCTTCACTTGATATTTGTCGTGTGATTGTTAGATCCCTAAAGTCACCTTCAAATGCTTCAGTTTTGTCCAATCTTCAGCAATATATGCAGGAACTTCAGGGTCTTAAGAAGGAGACAGCAGTGGTCTATATAGAAGAAGCACTTAGAAACCAAAGGAATAATGTTCAAACTTCAAATGATCGTCTAAAAGGAATTATTGAGTTACTTCACCTTACATCAAACCAGGAGCTTTTAAAAGAAAGTATTGCTGCGGAAAAGGAAAGGTTGAACACTGAAGTCAATAAAATGAAAGAGGAATTGGATGAAATTAACCAAATTGTGAATCTTGTCTGCAACTTACGCGAGTATGTGTTGAAATTTGAGTGCCGTGAAGTCAAACACGGTGTCTCTATCCCACAATACTTTAGATGTCCTTTATCATTGGAACTTATGTCAGAACCTGTTATTGTGGCTTCTGGTCAAACATACGAGAGGCAATCCATTCAAATGTGGCTTGATCATGGCCTGACTGTTTGTCCCAAGACTCATCAGAGACTTTCCCATACAAATCTTATTCCGAATTATACCGTGAAAGCTATGATAGCAAACTGGTGTGAGGAACATGCTGTCAAACTTCCCAATAACTCTAAGCCTAAAAGTTCTTACCATGTTTCAACCTCGTCAGATCATTCATTTCCTCAAGATTTTGATCCTGTGTGTAGTTTTGGGTCTTCACATAGTAGCTATTCCACTTCAAAATCGTCCCCTCAAACTGGAAGTGCATTTGAGAAGCAAAATGGTGATGGTTCTTTCAGACTAAGTGGAGAATCAAATGGATGCAGGAGTGGAGACACAGAAAAGTTTGACCACTCATCCCCTGAGGCTTCATGTAGTCACAGCAGAAGTGAATCAGTGTCAAGTTCTATTTCTAGCAGTGATTATGTATATCCAGTTTCAAAAGGGGTGTCAGCCATACCTAATAAGCATCAAAATGTGTTGTGCAGAGAAATCATAAATGAGCATCCTGCAAATAAAGAATCAGGGATTTCTACTCGGTTTTCAGGAAAGCAATCTCAAATCCCTGAATCCAAAATTGTAGGGGTGGAGAACGGAAATAATCATAGAAAGAATAATAATATTATTAATAGCCACACGGAAGTTGATTCGGTTCCTGCTTCCAACTTACAGCATGATGAACTAACTACCATATCTCATGTCAACAAGTTGATTGAAGACCTTCAGAGTAAGTCAAATGAGGTGCAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACCAAGAATAACATGGAAAACCGTGTCATTGTTGGTAAGTGTGGCGCAGTTACACCATTACTTTCGCTGCTGTATTCGAATGTGAAGATAACACAAGAACATGCTGTGACAGCTCTTCTGAATTTGTCAATTTACGAGGACAACAAGTCTTTGATTATGGAAGCAGGAGCCATAGAACCACTGATCCACGTTTTGAAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCAGCAGCACTATTCAGCCTCTCCGTAATAGAAAACAATAAGGAAAAAATTGGTCGTTCCAGTGCAGTTAAAGCTTTGGTGGATCTTCTAGCCTCAGGAACACTAAGGGGAAAGAAGGATGCTGCCACTGCTTTATATAACTTATCAATATTTCACGACAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAGTATCTGTCTCAGTTATTGGACCCAGCTGACAGAATGGTTGACAAGGCTGTTGCTCTTTTAGCAAATCTCTCAACAATTGCAGAGGGTCGAATAGAAATAACAAGGCAAGGGGGAATTCCCTTGCTAGTTGAAATTTTGGAGTCAGGTTCTCAAAGGGGGAAGGAAAATGCTGCTTCTATTCTCTTCCAACTATGCCTTCATAGTTCGAAGTTTTGTACCCTCGTTCTGCAAGAAGGAGCTGTACCACCCCTAGTTGCATTGTCTCAGTCCGGCACGACAAGAGCAAAAGAAAAGGCGCAACAGCTACTCAGTCATTTCCGTAATCAGCGTGAAGTGGCTGCCGGGAAGGGAAGATCATGA 2385 0.408 MHIGQTSTTSAKCLINSISRFIHLVSCHTVKPTPLKKNFDNMVSVLKRLKPVLDDVVDHNLLLEENLYRECEELDMLVNEAKELIEKWGPKMSKIRSVLRSGELLIKLQSASLDICRVIVRSLKSPSNASVLSNLQQYMQELQGLKKETAVVYIEEALRNQRNNVQTSNDRLKGIIELLHLTSNQELLKESIAAEKERLNTEVNKMKEELDEINQIVNLVCNLREYVLKFECREVKHGVSIPQYFRCPLSLELMSEPVIVASGQTYERQSIQMWLDHGLTVCPKTHQRLSHTNLIPNYTVKAMIANWCEEHAVKLPNNSKPKSSYHVSTSSDHSFPQDFDPVCSFGSSHSSYSTSKSSPQTGSAFEKQNGDGSFRLSGESNGCRSGDTEKFDHSSPEASCSHSRSESVSSSISSSDYVYPVSKGVSAIPNKHQNVLCREIINEHPANKESGISTRFSGKQSQIPESKIVGVENGNNHRKNNNIINSHTEVDSVPASNLQHDELTTISHVNKLIEDLQSKSNEVQTAAAEELRLLTKNNMENRVIVGKCGAVTPLLSLLYSNVKITQEHAVTALLNLSIYEDNKSLIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIENNKEKIGRSSAVKALVDLLASGTLRGKKDAATALYNLSIFHDNKARIVQAGAVKYLSQLLDPADRMVDKAVALLANLSTIAEGRIEITRQGGIPLLVEILESGSQRGKENAASILFQLCLHSSKFCTLVLQEGAVPPLVALSQSGTTRAKEKAQQLLSHFRNQREVAAGKGRS* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0271 794 Pfam Armadillo/beta-catenin-like repeat 623 659 IPR000225 GO:0005515
Amo06g0271 794 Pfam Armadillo/beta-catenin-like repeat 540 577 IPR000225 GO:0005515
Amo06g0271 794 Pfam Armadillo/beta-catenin-like repeat 581 618 IPR000225 GO:0005515
Amo06g0271 794 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Amo06g0271 794 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Amo06g0271 794 SUPERFAMILY RING/U-box 239 316 - -
Amo06g0271 794 Coils Coil 189 216 - -
Amo06g0271 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 591 IPR000225 GO:0005515
Amo06g0271 794 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 789 - -
Amo06g0271 794 Coils Coil 64 84 - -
Amo06g0271 794 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
Amo06g0271 794 MobiDBLite consensus disorder prediction 352 384 - -
Amo06g0271 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Amo06g0271 794 PANTHER U BOX DOMAIN-CONTAINING 11 789 - -
Amo06g0271 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 590 632 IPR000225 GO:0005515
Amo06g0271 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 672 713 IPR000225 GO:0005515
Amo06g0271 794 Coils Coil 509 529 - -
Amo06g0271 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 631 673 IPR000225 GO:0005515
Amo06g0271 794 MobiDBLite consensus disorder prediction 385 399 - -
Amo06g0271 794 MobiDBLite consensus disorder prediction 352 413 - -
Amo06g0271 794 Gene3D - 493 789 IPR011989 -
Amo06g0271 794 Coils Coil 128 148 - -
Amo06g0271 794 SUPERFAMILY ARM repeat 505 781 IPR016024 -
Amo06g0271 794 SMART arm_5 701 741 IPR000225 GO:0005515
Amo06g0271 794 SMART arm_5 620 660 IPR000225 GO:0005515
Amo06g0271 794 SMART arm_5 661 700 IPR000225 GO:0005515
Amo06g0271 794 SMART arm_5 538 578 IPR000225 GO:0005515
Amo06g0271 794 SMART arm_5 579 619 IPR000225 GO:0005515
Amo06g0271 794 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0271 Amo-Chr6 3648156 3652603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0271 12 794 U-box Gene Family AT3G54790 53.477 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0271 - - gmx:100804684 1051.97