Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0261 ATGGGTGACTCGTCGGTGCCAAGTGACAAGTTGGGTGAGTCTCCGGCGGTTGAGTTAACGGGCAAGATCATGGTGGTGGCCGTAATAGTGTTGTTCATGGTGGTTGTGTTCGTGCTGTTCCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGGAGAGAGCAACATTCCCCAACCCAGAAGGCGGCGGCGGCGCTTTGTGTTTGCTCCTGGTCAAGACCCGGCCAGCTCCGGCGGTGTCCGAAGAGGCCTTGAGCCTTCTGTGCTGAGATCCCTGCCGGTGTTGGTTTTCCAGCCGCAAGATTTCAAGGAAGGTATGGAATGTGCGGTTTGCCTTTCGGAGGTTGAAGAGGGYGAAAAGGCGAGGRTGTTACCAAAGTGCAATCATGGCTTCCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCCACTTGCCCCCTCTGCAGAAACCCTGTGACCTCTGCCACCGAATCTTCTTCTGATGCAGCTTTCCCCACAAATGTCTTCGTTTGGGGGAACCAGACCCAAGTGAGTTCTTCTTTGGAGGAAACTACTACTTCTTCCTCCTCGTCATCTTCAGCTAGCAGCAGTGACAGAGTTCATCATCATGGCGGTGGATCGTTGGTGATTGATATACCAAGCGAGATCACTTCATCTTCTGCAAGCAGGTTTGCAGAAGAAGATGAGATGAAATCTCCCATTACAGGGAGACTGAAATCATTGAAGAGGCTGTTAAGCAGGGACAGGAGGATGAATCCTTCTAGTCCACGTTCTATAGACCTTGAACATGCAACGGGATCAGGGCAGAGCTCTAGTTAG 825 0.5127 MGDSSVPSDKLGESPAVELTGKIMVVAVIVLFMVVVFVLFLHLYAKWFWWSIGESNIPQPRRRRRRFVFAPGQDPASSGGVRRGLEPSVLRSLPVLVFQPQDFKEGMECAVCLSEVEEGEKARXLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVTSATESSSDAAFPTNVFVWGNQTQVSSSLEETTTSSSSSSSASSSDRVHHHGGGSLVIDIPSEITSSSASRFAEEDEMKSPITGRLKSLKRLLSRDRRMNPSSPRSIDLEHATGSGQSSS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0261 274 MobiDBLite consensus disorder prediction 224 258 - -
Amo06g0261 274 PANTHER RING-H2 FINGER PROTEIN ATL3 5 259 - -
Amo06g0261 274 SMART ring_2 109 150 IPR001841 -
Amo06g0261 274 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 259 IPR044675 -
Amo06g0261 274 Pfam Ring finger domain 108 151 IPR001841 -
Amo06g0261 274 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Amo06g0261 274 MobiDBLite consensus disorder prediction 260 274 - -
Amo06g0261 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 157 IPR013083 -
Amo06g0261 274 MobiDBLite consensus disorder prediction 182 202 - -
Amo06g0261 274 SUPERFAMILY RING/U-box 89 158 - -
Amo06g0261 274 CDD RING-H2_EL5_like 108 151 - -
Amo06g0261 274 MobiDBLite consensus disorder prediction 182 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0261 Amo-Chr6 3550637 3552420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0261 18 254 C3H Transcription Factor Family AT1G53820 39.456 7.77e-58 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0261 - - adu:107491762 469.929