Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0258 ATGGATTCGATAAACTCGTTCAAAGGGTATGGCAAAGTGGACGAGGCAGAGCAGCAAGCCTTCCAGAAGAAGACTCGCAAGCGCCTCATCATACTCATAGTCTCCTCCATAGTCCTCATCGCCGTCATCATCGCCGCCGTCCTAGGCACCGTCCTACACAGCCGCCGTTCTTCCTCTGGCCCCTCAACGGAGCTATCCCCGGTGTCCTCTCTGAGGGCCGTGTGCGAAGTCACCCAGTACCCAGAMTCGTGCATGTCGAGCATCTCGTCCCTCCCAGACTACTCCAACACCACCGACCCACACCTCCTCTTCAGCCTCTCCCTCCGCGTAGCCATTAACGAGCTCTCCAACCTCTCCCATTATCCTTTCAAGCTCCGTTCCTCCATCAAGGAACCCCGTCTCCAGAAAGCCATTGATGTCTGTGCTACGGTCCTCGCCGACGCTGTCGCCAATTTCAACGACTCCGTCTCCACCCTCGACGCCGCCGGCAAGCTACCATCTACCACCAAGATCAGTGACATTAAYACCTGGGTGAGCGCCGCCATCACCAACCAAGATACCTGCTTGGACGCCCTCGAGGAGGTTAATAACTCCACCGCCGCCAACGCCGCCCTCGAGGACATGAAAACCACCATGAAGAACTCCACGGAGTTCTCGAGCAACAGCCTGGCCATCGTGACGAGGATCCTGGGGCTGCTCTCCCAATTCAACAGCCCGGTGAACAGGCGGCGGCTTCTGGGGTTCCCGGAGTGGGTGGGGGCGGCGGAGAGGAGGCTGCTGCTGGATAATGGGAACACCGCGACGCCGGATGCGGTGGTGGCGAGCGATGGGAGTGCGCAGTACAAGACGATAAAAGAGGCGGTGCTTGCGGTGAAGAAGAAGAGCGAGAAGAGATTCGTGATATATGTGAAGGCAGGGACTTATGTTGAGAACATTGATTTGGATAAGGACACTTGGAATGTTATGATCTACGGTGATGGAAGTGACAAGACCATCATCTCCGGCAGCCGCAACTTCATCGACGGCACTCCCACTTTTGAGACTGCCACTTTCGCTGTGAAGGGAAAGGGTTTTATTGCAAAGGACATACGGTTCAAGAACACGGCAGGCGCAGACAAGCATCAGGCGGTGGCACTGCGATCAGGGGCGGACCAATCAGTGTTCTACAGGTGCTCCTTTGAGGGTTTCCAGGACACACTCTACGCCCATTCCAACAGGCAGTTCTACCGCGACTGCGACATCACCGGCACCATCGACTTCATCTTTGGCAACGCCGCGGTGGTCTTCCAGAACTGCAAGATCATGCCACGTCAGCCTCTCCCCAACCAGTTCAACACCATAACCGCTCAGGGAAAGAAAGACCCCAACCAGAACACCGGCATCGTCATCCAGAAATGCTCCTTCTCTGCCTTCGCCAATGATCTTCAGGCCCCTACCTACCTTGGCCGCCCTTGGAAGGATTTTTCCACCACCGTCATTATGCAGTCCGATATCGCCTCCTTCTTGAAGCCCGTGGGCTGGATAAGCTGGGTTGCCAATGTCGATCCACCAAAAACTATATTTTACGGTGAGTACCGCAACACTGGGCCTGGATCCGATGTCTCGCAACGGGTTAAGTGGGCTGGCTATAACCCCTCTCTAACGGAAACTGATGCTGCCAAGTTCACAGTGCAGTCCTTTATTCAGGGCCCAGATTGGTTGCCAAATTCTGCTGTAAACTTTGACTCCACTCTCTGA 1737 0.5533 MDSINSFKGYGKVDEAEQQAFQKKTRKRLIILIVSSIVLIAVIIAAVLGTVLHSRRSSSGPSTELSPVSSLRAVCEVTQYPXSCMSSISSLPDYSNTTDPHLLFSLSLRVAINELSNLSHYPFKLRSSIKEPRLQKAIDVCATVLADAVANFNDSVSTLDAAGKLPSTTKISDINTWVSAAITNQDTCLDALEEVNNSTAANAALEDMKTTMKNSTEFSSNSLAIVTRILGLLSQFNSPVNRRRLLGFPEWVGAAERRLLLDNGNTATPDAVVASDGSAQYKTIKEAVLAVKKKSEKRFVIYVKAGTYVENIDLDKDTWNVMIYGDGSDKTIISGSRNFIDGTPTFETATFAVKGKGFIAKDIRFKNTAGADKHQAVALRSGADQSVFYRCSFEGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKCSFSAFANDLQAPTYLGRPWKDFSTTVIMQSDIASFLKPVGWISWVANVDPPKTIFYGEYRNTGPGSDVSQRVKWAGYNPSLTETDAAKFTVQSFIQGPDWLPNSAVNFDSTL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0258 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 230 IPR035513 -
Amo06g0258 578 Pfam Plant invertase/pectin methylesterase inhibitor 70 225 IPR006501 GO:0004857
Amo06g0258 578 PANTHER PECTINESTERASE 1-RELATED 8 575 - -
Amo06g0258 578 CDD PMEI-like_3 73 229 - -
Amo06g0258 578 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Amo06g0258 578 PANTHER PECTINESTERASE 8 575 - -
Amo06g0258 578 Gene3D - 264 578 IPR012334 -
Amo06g0258 578 SMART PMEI_2 66 225 IPR006501 GO:0004857
Amo06g0258 578 TIGRFAM PME_inhib: pectinesterase inhibitor domain 43 227 IPR006501 GO:0004857
Amo06g0258 578 ProSitePatterns Pectinesterase signature 1. 295 314 IPR018040 -
Amo06g0258 578 Pfam Pectinesterase 270 563 IPR000070 GO:0030599|GO:0042545
Amo06g0258 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 229 IPR035513 -
Amo06g0258 578 SUPERFAMILY Pectin lyase-like 267 576 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0258 Amo-Chr6 3533418 3538496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0258 1 572 Carbohydrate Esterase AT1G53840 59.524 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0258 - - gmx:100777128 856.67