Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0254 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGCGGCGGCGGTGACAGCTAGGTCTCGCCGGCTCACCGCGGAGTACCTGTGGCCTGACCTGAAGAAAGGCAGCTCAGGGAAGCGCGTGCCGAAGGCAGCGGTYATCGACCTCGACGATGATTTCGAGGCCGATTTCAGGGAATTCAAGGACGACTCCGACATCGACATTGACGACGATGAGGATGATGCCAAGCCCTTTGCTTTCGCCGCCGCCAAAGCTCCCAAGTCCATATCCCGTGCTGGAAAATCTGCGGTCAAAGCACAATCTGAGAAGTCTGCAAAGAGAAAGAGGAAGAATCAGTACAGGGGAATCCGTCAGCGTCCTTGGGGGAAATGGGCGGCTGAGATCCGTGATCCAAGAAAGGGTGTTCGTGTCTGGCTAGGAACCTTCAGCACTGCTGAAGAGGCTGCCAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAGGCACCACGCACTCCTCCGAAACGTGCCAGGCCAAATCTGAATGCTGTTCAGCCCAATCTGAGTCATAAATTCAGTGTTGGTAACAATATGGAGAACTATGGTCCTCTGGATGGGTTTGAACAGAAACCACTGGTTAACCAGACTGCTAACATGGACTCCATTCCTGAGGGTGGAAATGGTTTTACATCCCTTACCTCACCTGATGATGTGACCCTTTACTTCAGCTCGGATCAGGGGAGTAATACATTTGATTATTCAGATCTTCGCTGGGGTGAACAGGCCCCAAAGACTCCCGAGATCTCATCCATGCTTTCTGCTGCTCTGGAAGGGGAATCTCCTTTTGAGCAAGATGCTAACCAACAGAAAAATCTGCAGTCTATCTCACAGGATGTGGTACCTATGAAAGATGATTCTTCAAAGACACTGTCTGAGGAGCTTGTGGATATTGAATCCGATTTGAAATTCTTTCAGATGCCTTTTCTTGAAGGGAGCTGGGATGATACTTCATTGGAATCTTTGCTAGCTGGAGACACCACTCAGAATGGTGAAAACCTGATGAACCTGTGGAGCTTTGATGACATTCCTTCCATGTCTGGTGGTGTGTTCTGA 1125 0.5004 MCGGAIISDFIPAAAAVTARSRRLTAEYLWPDLKKGSSGKRVPKAAVIDLDDDFEADFREFKDDSDIDIDDDEDDAKPFAFAAAKAPKSISRAGKSAVKAQSEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPEEAPRTPPKRARPNLNAVQPNLSHKFSVGNNMENYGPLDGFEQKPLVNQTANMDSIPEGGNGFTSLTSPDDVTLYFSSDQGSNTFDYSDLRWGEQAPKTPEISSMLSAALEGESPFEQDANQQKNLQSISQDVVPMKDDSSKTLSEELVDIESDLKFFQMPFLEGSWDDTSLESLLAGDTTQNGENLMNLWSFDDIPSMSGGVF* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0254 374 PANTHER EREBP TRANSCRIPTION FACTOR 1 368 - -
Amo06g0254 374 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
Amo06g0254 374 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Amo06g0254 374 PANTHER DNA-BINDING DOMAIN 1 368 IPR044808 GO:0003700|GO:0009873
Amo06g0254 374 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Amo06g0254 374 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Amo06g0254 374 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Amo06g0254 374 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Amo06g0254 374 MobiDBLite consensus disorder prediction 92 117 - -
Amo06g0254 374 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Amo06g0254 374 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0254 Amo-Chr6 3505728 3508585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0254 1 374 AP2-EREBP Transcription Factor Family AT1G53910 45.012 2.35e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo06g0254 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0254 K09286 - gmx:100170723 430.639