Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0235 ATGCTGCATGGATTTTTACCAACCAGTCAGACACCAATTCCATTTAGATATGCAAGTAATGGAACTATCCATCCTTCTTTGATTCATTTTTGTGTAACCTCCCTCTCTTGGAAAAGCAGTTGTAACATGGCTGAGGAACTGGATAAGCCTCTGCTTGATCCTGAGAATTTCAACCGAGATGGTATTGATTTGGAGCGCATACCATTGGAAGAAGTATTTCAACAGTTGCGAACATCGCGAACCGGACTTTCATCTGACGACGCTGAAGCCCGGCTGCAGATATTTGGCCCCAACAAACTTGAAGAGAGGAAAGAGAATAAAATACTGAAATTTCTAAGTTTTATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCAGCATTGATGGCCATTATCCTTGCTAATGGGGGAGTAAGTAGAGAACATATTCACCTTCACTCTTCAATCCTTTGGAATTTTATGCCTCTGGTAATAAACTCAACAATAAGTTTCATAGAAGAAAATAATGCTGGTAATGCTGCAGCAGCACTAATGGCTCGTTTAGCTCCTAAAACAAAGGTTCTAAGAGATGGGCTATGGCAAGAGCAAGATGCAGCTATATTAGTACCTGGAGACATAATCAGCATAAAGCTAGGAGATATCGTTCCAGCCGATGCTCGATTGCTCGAAGGGGACCCTCTAAAAATTGATCAGGCAAAATCAAGATGCTTTCTTATGCAGTCTGCGCTTACCGGAGAATCTCTACCTGTCACAAAGAGAACAGGTAATGAGGTATTTTCAGGTTCAACATGTAAGCAGGGAGAGATTGAAGCTGTAGTGATAGCAACAGGAGTTCATTCCTTTTTCGGAAAGGCAGCACATTTGGTAGATAGCACAGAAGTTGTTGGGCACTTTCAGAAGGTCCTTACTTCAATTGGTAACTTCTGCATTTGCTCTATAGCTATAGGGATGCTACTTGAAATAATCATAATGTTCCCAGTGGAGCATCGTTCATACAGGGATGGAATTAACAACCTTCTTGTTCTCTTGATTGGAGGAATACCCATTGCCATGCCTACAGTACTGTCTGTGACACTTGCAATCGGCTCTCATCGTCTTTCTCAGCAGGGAGCCATCACAAAGAGAATGACAGCCATAGAAGAAATGGCTGGGATGGATGTCCTATGCAGTGATAAAACTGGAACTCTTACACTAAACCGGTTAACCGTTGATCGAAACCTTGTAGAGGTCTTTAACAGAAACATGGACAGAGATATGGTTATTCTATTAGCAGCCAGAGCATCCAGACTGGAAAACCAAGATGCCATTGACAGTGCCATTGTTAACATGCTAGCTGATCCAAAGGAGGCACGTGCAAACATTACTGAGCTTCATTTTCTACCTTTCAATCCAGTAGATAAACGCACAGCAATCACATATATTGATTCAGAGGGTAACTTTTACAGGGCCAGCAAAGGAGCACCCGAACAGATTCTAAATATGTGCCAAGAGAAAGACGAGATTGCTAGAAAAGTGCATGCAATCATTGACAAATTTGCTGAGAGGGGACTGCGATCTCTTGCAGTGGCGTATCAGGTAGCGTGGCATGCCATTCCTCTATTTCCATGCTTGGAAATCCCTGAAAAATCCAAGGATGGTCCTGGAGGTCCATGGACATTTTGTGGTTTGTTGCCTCTTTTTGATCCTCCAAGACATGATAGTGCTGAGACCATCAGGAGAGCACTTAACCTGGGAGTCTGTGTTAAGATGATCACAGGGGATCAGTTGGCAATTGCAAAGGAGACTGGCAGAAGACTTGGTATGGGGACAAACATGTATCCTTCTTCATCTTTATTGGGACGTGAAAAAGATGAAAATGAAGCACTCCCAGTCGACGAGCTCATCGAAAAGGCAGATGGCTTTGCTGGTGTATTTCCTGAACATAAATATGAAATAGTGAAAATTTTGCAAGAAAAGAAGCATGTAGTTGGAATGACAGGAGATGGAGTGAATGATGCCCCAGCACTGAAGAAAGCAGATATTGGAATAGCTGTGTCAGATGCTACAGATGCTGCAAGAGGTGCTGCTGATCTGGTCTTAACTGAGCCTGGCTTAAGTGTGATCATCAGCGCCGTCTTAACTAGCCGAGCTATATTTCAGAGAATGAAAAATTATACAATATATGCTGTTTCCATCACAATAAGGATAGTGCTTGGCTTTGTGCTCCTAGCTTTGATTTGGGAGTTTGATTTCCCACCTTTCATGGTCCTTATTATTGCAATACTGAATGATGGCACGATCATGACCATATCGAAAGACCGAGTGAAGCCATCCCCTACACCTGATAGTTGGAAGCTGCCAGAGATATTTGCCACAGGAATTGTCATTGGCACATACCTTGCTTTGGTTACTGTCCTATTCTACTGGGCAGTAGTTGACACCACTTTCTTTGAGACTCACTTCCATGTAGCATCCTTATCCAGTGACAGTGAGAAAGTTGCATCTGCTGTATATCTGCAAGTTAGCATCATCAGCCAAGCTTTAATTTTCGTGACTCGCAGCCGCGGCTGGTCATTCCTAGAGAGACCAGGAGTTCTACTAATGTGTGCCTTTGTAATAGCTCAATTGGTAGCCACCTTGATTGCTGTCTATGCACACATCAGTTTTGCTTATATAAGAGGAATTGGATGGCGTGGGCTGGTGTTATATGGTTATATAGTTTAG 2703 0.4284 MLHGFLPTSQTPIPFRYASNGTIHPSLIHFCVTSLSWKSSCNMAEELDKPLLDPENFNRDGIDLERIPLEEVFQQLRTSRTGLSSDDAEARLQIFGPNKLEERKENKILKFLSFMWNPLSWVMEAAALMAIILANGGVSREHIHLHSSILWNFMPLVINSTISFIEENNAGNAAAALMARLAPKTKVLRDGLWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQAKSRCFLMQSALTGESLPVTKRTGNEVFSGSTCKQGEIEAVVIATGVHSFFGKAAHLVDSTEVVGHFQKVLTSIGNFCICSIAIGMLLEIIIMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLVEVFNRNMDRDMVILLAARASRLENQDAIDSAIVNMLADPKEARANITELHFLPFNPVDKRTAITYIDSEGNFYRASKGAPEQILNMCQEKDEIARKVHAIIDKFAERGLRSLAVAYQVAWHAIPLFPCLEIPEKSKDGPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGREKDENEALPVDELIEKADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARGAADLVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEFDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLALVTVLFYWAVVDTTFFETHFHVASLSSDSEKVASAVYLQVSIISQALIFVTRSRGWSFLERPGVLLMCAFVIAQLVATLIAVYAHISFAYIRGIGWRGLVLYGYIV* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0235 900 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 156 525 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo06g0235 900 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 634 746 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo06g0235 900 PRINTS P-type cation-transporting ATPase superfamily signature 239 253 - -
Amo06g0235 900 PRINTS P-type cation-transporting ATPase superfamily signature 682 694 - -
Amo06g0235 900 PRINTS P-type cation-transporting ATPase superfamily signature 577 587 - -
Amo06g0235 900 PRINTS P-type cation-transporting ATPase superfamily signature 555 566 - -
Amo06g0235 900 PRINTS P-type cation-transporting ATPase superfamily signature 659 678 - -
Amo06g0235 900 PRINTS P-type cation-transporting ATPase superfamily signature 389 403 - -
Amo06g0235 900 SUPERFAMILY HAD-like 385 706 IPR036412 -
Amo06g0235 900 SFLD C1.7: P-type atpase like 371 710 - -
Amo06g0235 900 Gene3D - 386 696 IPR023214 -
Amo06g0235 900 PRINTS H+-transporting ATPase (proton pump) signature 659 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo06g0235 900 PRINTS H+-transporting ATPase (proton pump) signature 831 852 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo06g0235 900 PRINTS H+-transporting ATPase (proton pump) signature 690 715 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo06g0235 900 PRINTS H+-transporting ATPase (proton pump) signature 505 523 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo06g0235 900 Gene3D - 401 560 IPR023299 GO:0000166
Amo06g0235 900 Pfam haloacid dehalogenase-like hydrolase 385 673 - -
Amo06g0235 900 Pfam E1-E2 ATPase 181 368 - -
Amo06g0235 900 PANTHER ATPASE 10, PLASMA MEMBRANE-TYPE 43 891 - -
Amo06g0235 900 Gene3D - 183 276 - -
Amo06g0235 900 CDD P-type_ATPase_H 82 895 IPR006534 GO:0008553|GO:0016021|GO:0120029
Amo06g0235 900 Gene3D - 156 886 - -
Amo06g0235 900 SUPERFAMILY Calcium ATPase, transmembrane domain M 62 895 IPR023298 -
Amo06g0235 900 SMART Cation_ATPase_N_a_2 63 135 IPR004014 -
Amo06g0235 900 Pfam Cation transporter/ATPase, N-terminus 67 129 IPR004014 -
Amo06g0235 900 SFLD p-type atpase 371 710 IPR044492 -
Amo06g0235 900 SUPERFAMILY Calcium ATPase, transduction domain A 183 289 IPR008250 -
Amo06g0235 900 ProSitePatterns E1-E2 ATPases phosphorylation site. 391 397 IPR018303 -
Amo06g0235 900 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 82 877 IPR006534 GO:0008553|GO:0016021|GO:0120029
Amo06g0235 900 PANTHER CALCIUM-TRANSPORTING ATPASE 43 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0235 Amo-Chr6 3299630 3305802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0235 43 891 Primary Pumps ATPases AT1G17260 80.330 0.0 1335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0235 K01535 - gmx:100795836 1459.12