Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0233 ATGAAGTCCCTCACAGTCACCGCCAGTGTTTTGAACCCCACAAATCAACCACCAGTCAACAAACTCCACTTCTTCCACTCTCACTCTCTCTCATTCTCACTCTTCTTCCCACACACATCATCAAACCTAAAATGCCACCATCAAAAGCCAATCATCACAGCATGCTCTTCTTCTTCTTCAATCGAAATCGACATGGTGAAGAACAACCAAGGAATCTACACCCCTAAGCACCCCAAAGTAGTCGTCCTCTGGGACCTCGACAATAAGCCCCCACGAGGACCCCCATACGACGCCGCACGCTCCCTCACACGCCTCGCAACTCACTTTGGCCACATCGTCGACATCTCTGCCTACGCCAATCGCCACACATTCATCCACCTACCGCAGTGGGTCCTACAGGATCGCCGCCAGAGAAAGCACCTCGACGTGCTGGAACGGAAGGGCCTGGTGGTGCCATCGGAGCCCTACAGGTGTTCCGTCTGCGGGAAAAAGTGTCGCACCAATCTGGATCTGAAGAAGCATTTCAGGCAGTTGCATGAACGAGAGAGGCAGAAGAAGCTTAATCGGATGAGGTCCTTGAAAGGGAAGAAACGGCAGCGTTTTAAAGAGAGGTTTATTCAGGGGAATGAAAAGTATAATGAGGCTGCTAGGTCTCTCATTAGGCCCAAGGTTGGTTATGGGCTAGCTTCAGAGCTGAGGAGGGCTGGGGTATATGTGAAGACTGTGGAGGATAAGCCTCAGGCTGCAGATTGGGCATTGAAGAGGCAGATGCAGCACTCAATGACCAGGGGGATTGATTGGCTGGTTTTGGTTTCAGATGATTCGGATTTCCAGAGATGTGAGGAGAGCAAGAGAGAGGGAATTGGGGACAGTGGTGGTTGGGGATTGGGATAG 894 0.5145 MKSLTVTASVLNPTNQPPVNKLHFFHSHSLSFSLFFPHTSSNLKCHHQKPIITACSSSSSIEIDMVKNNQGIYTPKHPKVVVLWDLDNKPPRGPPYDAARSLTRLATHFGHIVDISAYANRHTFIHLPQWVLQDRRQRKHLDVLERKGLVVPSEPYRCSVCGKKCRTNLDLKKHFRQLHERERQKKLNRMRSLKGKKRQRFKERFIQGNEKYNEAARSLIRPKVGYGLASELRRAGVYVKTVEDKPQAADWALKRQMQHSMTRGIDWLVLVSDDSDFQRCEESKREGIGDSGGWGLG* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0233 297 CDD PIN_LabA-like 166 277 - -
Amo06g0233 297 Coils Coil 176 196 - -
Amo06g0233 297 SMART c2h2final6 156 179 IPR013087 -
Amo06g0233 297 Gene3D Classic Zinc Finger 133 216 - -
Amo06g0233 297 SUPERFAMILY beta-beta-alpha zinc fingers 153 184 IPR036236 -
Amo06g0233 297 ProSitePatterns Zinc finger C2H2 type domain signature. 158 179 IPR013087 -
Amo06g0233 297 PANTHER OS06G0166200 PROTEIN 49 279 - -
Amo06g0233 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 184 IPR013087 -
Amo06g0233 297 PANTHER - 49 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0233 Amo-Chr6 3292782 3295467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0233 21 287 C2H2 Transcription Factor Family AT5G52010 67.790 1.67e-132 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo06g0233 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0233 - - adu:107495834 530.791