Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0219 ATGGAGAGGCTTCAGCTTCAAGGACCCCTTGACTCCTCTTTGTTTGGTGAGCACCTAGAAGTGAGTTGCTTGGAACAAGGTTTTGTCCATAGAGAGAGTAACTTCAAAGTCAAGGAGGATGAACATGAAGAACAAACTTTGATATCAAGCTTGGAGGGTAACATGCCATTCCTTCAGATGCTTCAAAGCGTGGAATCCCCGCAGCATCTTAAGAAACCATGGGAAGGGACGCCCTACATACCCACATTGGAATCCGAAATCAATGAATTTGAACAGTACACACGTTCAGGCAGTGATGCTGCTACCAGGTTATCGAAACATCATCATCAGGAACGGGTGAGGAAGAGGAAGAGAGGAAGAGAAAGTAAAGACAAGGACAAGGAAGAGGTTGAGAACCAGCGCATGACCCACATTGCTGTGGAACGCAATAGGCGGCGCCAAATGAATGAGCATCTCAGTGTTCTAAAGTCTCTCATGCACCCTTCCTATATTCAAAGGGGTGACCATGCATCAATCATAGGGGGTGCAATAGACTTTGTGAAGGAATTGGAGCAGTTAGTTGAATCCCTTGAGGCCCAAAGAAGGATGAGAAACAAGGAAGAAGAGGATGGTGGGAAAGAAGAAGCAAGTGGTGGCAATGAGGCTAAGGCTGAGAGAAGGTCAAAGGTGGGAGGCATTGAGGTGAGTGTGATTCAAAGCCATGTCAACTTGAGAATTCAGTGCGAGAAGAGAGCAGGGCTATTGATAAATGCAATCGTTGCATTGGAGAACCTAAGGCTCCCTATTCTTCATCTCAACATCACATCCTCAGATTCTTCAGTTCTCTATTCTTTCAGTCTCAAGATTGAAGAAGACAGCAAGTTAGGGTCAGCAAATGAAATTGCAGAGGCAGTTGATAAGATATTGACTTCATTAAGACATTAA 924 0.4481 MERLQLQGPLDSSLFGEHLEVSCLEQGFVHRESNFKVKEDEHEEQTLISSLEGNMPFLQMLQSVESPQHLKKPWEGTPYIPTLESEINEFEQYTRSGSDAATRLSKHHHQERVRKRKRGRESKDKDKEEVENQRMTHIAVERNRRRQMNEHLSVLKSLMHPSYIQRGDHASIIGGAIDFVKELEQLVESLEAQRRMRNKEEEDGGKEEASGGNEAKAERRSKVGGIEVSVIQSHVNLRIQCEKRAGLLINAIVALENLRLPILHLNITSSDSSVLYSFSLKIEEDSKLGSANEIAEAVDKILTSLRH* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0219 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 183 IPR011598 GO:0046983
Amo06g0219 307 Gene3D - 130 204 IPR036638 GO:0046983
Amo06g0219 307 PANTHER MAX DIMERIZATION, MAD 25 70 - -
Amo06g0219 307 PANTHER MAX DIMERIZATION, MAD 85 303 - -
Amo06g0219 307 Pfam Helix-loop-helix DNA-binding domain 133 184 IPR011598 GO:0046983
Amo06g0219 307 SMART finulus 138 189 IPR011598 GO:0046983
Amo06g0219 307 MobiDBLite consensus disorder prediction 194 220 - -
Amo06g0219 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 198 IPR036638 GO:0046983
Amo06g0219 307 PANTHER TRANSCRIPTION FACTOR BHLH70 25 70 - -
Amo06g0219 307 PANTHER TRANSCRIPTION FACTOR BHLH70 85 303 - -
Amo06g0219 307 Coils Coil 180 203 - -
Amo06g0219 307 MobiDBLite consensus disorder prediction 94 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0219 Amo-Chr6 3144974 3146336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0219 49 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 40.468 2.07e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo06g0219 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0219 - - adu:107491895 594.349