Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0217 ATGCAAATGCAGGAGGAGCAGATCATGAAGCTGAAGGACGAGAATGCGCCACCGGGGGACGTGGTGGTTAGGTGGGAGAAGTTTCTCCCTCGGATGGCGCTCAGAGTGTTGCTTGTTGAAGCCGATGATTCTACACGCCAGATCATATCCGCCCTTCTCCGAAAATGCAGTTACAAAGTTGCTGCAGTTCCTGATGGCCTAAAGGCATGGGAGACATTGAAGAGCAAAGCACCTGAGATTGATCTTATATTAACAGAAGTGGAGTTGCCGTCAATATCTGGATTTTCACTTCTCACGTTGATAATGGAGCATGACATCTGCAAAACCATTCCTGTCATAATGATGTCTACTAATGATTCAATTAGCATGGTATTCAAATGCATGCTGAAAGGTGCGGCTGATTTTCTTATAAAACCCATTCGAAGGAATGAGCTACGGAACTTATGGCAGCACGTATGGAGAAGGCATGCTATTAGCGGGTCCCATCAGAGTTTAACATTGCCGCAGAATAAATTTGAAGTTGCTGCAGAAAACAATGCTACGAGCAATAATTCTAGTGGTTCTGTGGCTTCCCCACAGAAAAATAAAGAGTACAGTGGTGAGAAAGCAAGTGATGCTCAAGTTACGTCCCCGTTGAAAAGTTCCTCGAAGTTGATTGATATTGACACAGTGAAGCATGAAGAGGCTACCAAATTTGAAAGGGAATCAGCTACGCACTATAGTGAATCCGGTGAGAAATCAAATATGTTTGTATCCGATGCTACAAGGTGCTACAAAACTCTTAATGCGACAGGTGTAAGGCTAGATCAAGGCTTTGATTGTGATGAAACAGAAAATGAAGATGAAGTTTTAAGAACAGAATTAAGCAAAGCCCATCCTCATATTAATACCGAGATCAACAAATGCAATGATACACTGGTAGAACCTTCTACAGGGGCAATTGACTTGATTGCTACATTTGAGAATTCTCCAAAGAGCACGGGTGAAATTTGTAGTTTCAATGCTGACAACGCATTCAAGTCAGTTTTTGATACACAATTGGGACTTTCTTTAAGAAGAGATTCTCCTAGTAGCTCATGTAAGCCTGCACTGGAAGAAAGGAAAATATTGAACCATTCAACTGCATCGGCCTTTTCTTGGTATAGCAGCAGTAAGTTGTTGCAGCCCCTTTTCCCATCTCAATCAATTACTTCTGCTAAACTATCAAGTGTCAGTTGTAATTCTCATGAATCCCATAAGTCATCTGAAAATACACATACTCATCATCAGCACGGTGATAAAATTCAAGATAAACAGAACATGACCACTTTGGTCACTCAGACTGGCCAAATTGAACCAAAATCACCAAACAATGAACTTGGATTCTCTTGTGCTACTGGTGTTTCTTCTGATCATAACTCTATGAGGCATGCCAATGCTTTCCCTCGTATGCCCTGTGCACAATCAGCTGTGCATCCCATATGGACTCCGAAACCAGTGTCCAAGAAAGAAAATTCTCCATTTCCCACTAGTGCTGCTTCTCATTCCAACCCTGAAACTGACAATTCAGAATGTCATCGATGCTCGGATGATGCCACCTACACTTCTGATCAAAATGGAAATGATCAAAGCAAGTTGGATTGTGTTAGGCATGACTCTGTTGCTGCTGGTGGTCAGAGTGCAAGTACTAGTTTTTACCTTGAAAATCATAATAGCAGCGGTGCATATGGAAGCATAGGCAGCGGAAGTGATGCAAATGCTACTTCAGCTGTTGTAACTAAGAACAACCCTGAAAGTTTTGCTGATAGTAGTCAACATAGTCATGATGGATTCAGAGGGACAGATTCTCATCGGAGCAGCCAAAGAGAAGCAGCTCTAACAAAGTTTCGGCTGAAGAGGAAGGAGAGATGCTACGAGAAGAAGGTTCGATATCAGAGCCGGAAAAGACTGGCAGAGCAGCGCCCTAGGGTGAAAGGGCAGTTCGTTCGCCAGGTGCAAAATGATCATCCAGTAGCAGGTGTAGGTGGCTCCTGA 2013 0.4302 MQMQEEQIMKLKDENAPPGDVVVRWEKFLPRMALRVLLVEADDSTRQIISALLRKCSYKVAAVPDGLKAWETLKSKAPEIDLILTEVELPSISGFSLLTLIMEHDICKTIPVIMMSTNDSISMVFKCMLKGAADFLIKPIRRNELRNLWQHVWRRHAISGSHQSLTLPQNKFEVAAENNATSNNSSGSVASPQKNKEYSGEKASDAQVTSPLKSSSKLIDIDTVKHEEATKFERESATHYSESGEKSNMFVSDATRCYKTLNATGVRLDQGFDCDETENEDEVLRTELSKAHPHINTEINKCNDTLVEPSTGAIDLIATFENSPKSTGEICSFNADNAFKSVFDTQLGLSLRRDSPSSSCKPALEERKILNHSTASAFSWYSSSKLLQPLFPSQSITSAKLSSVSCNSHESHKSSENTHTHHQHGDKIQDKQNMTTLVTQTGQIEPKSPNNELGFSCATGVSSDHNSMRHANAFPRMPCAQSAVHPIWTPKPVSKKENSPFPTSAASHSNPETDNSECHRCSDDATYTSDQNGNDQSKLDCVRHDSVAAGGQSASTSFYLENHNSSGAYGSIGSGSDANATSAVVTKNNPESFADSSQHSHDGFRGTDSHRSSQREAALTKFRLKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVQNDHPVAGVGGS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0217 670 Pfam CCT motif 615 657 IPR010402 GO:0005515
Amo06g0217 670 MobiDBLite consensus disorder prediction 490 518 - -
Amo06g0217 670 MobiDBLite consensus disorder prediction 590 620 - -
Amo06g0217 670 MobiDBLite consensus disorder prediction 412 429 - -
Amo06g0217 670 CDD psREC_PRR 36 139 - -
Amo06g0217 670 ProSiteProfiles CCT domain profile. 615 657 IPR010402 GO:0005515
Amo06g0217 670 MobiDBLite consensus disorder prediction 601 620 - -
Amo06g0217 670 ProSiteProfiles Response regulatory domain profile. 35 153 IPR001789 GO:0000160
Amo06g0217 670 SUPERFAMILY CheY-like 34 163 IPR011006 -
Amo06g0217 670 Gene3D - 32 263 - -
Amo06g0217 670 Pfam Response regulator receiver domain 36 147 IPR001789 GO:0000160
Amo06g0217 670 MobiDBLite consensus disorder prediction 496 512 - -
Amo06g0217 670 PANTHER PRR RESPONSE REGULATOR 211 654 - -
Amo06g0217 670 PANTHER PRR RESPONSE REGULATOR 27 213 - -
Amo06g0217 670 MobiDBLite consensus disorder prediction 407 432 - -
Amo06g0217 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 211 654 IPR045279 GO:0009736
Amo06g0217 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 213 IPR045279 GO:0009736
Amo06g0217 670 MobiDBLite consensus disorder prediction 179 211 - -
Amo06g0217 670 SMART REC_2 34 149 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0217 Amo-Chr6 3130535 3135730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0217 610 659 Response Regulator Gene Family AT5G24470 84.000 1.08e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Amo06g0217 Response_reg 2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0217 K12130 - gmx:100779346 820.461