Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0204 ATGTGCAGAAAAACTGTGATATGCAAAGTTCGCGAACCCGGTGTTGGTCATACTCTTAATGCAGAAACAACACCCAAGGTTGTTCGCGTTTCAGTAATGGATCCGGAGATCACTGATTCTTCGAGTGACGAGGAAGAATATCAACAGTATCAAGGACGACGAACCAAAGTGAATTCGAAACACATTGTAAACGAGATAAGAATTTTGTATCCGCCATCTCACAACACCACCAAGGTGCAAAGATCTAAACAGCAACAACAACAGAACAAGGGCAAAAAAGTGGTTGTAGCTGCCATGAAAGCTTCTTCTTCTTGTTCTCAAGAGGGTAGGAAGCTACGCGGCGTTAGGCAAAGGCCATGGGGGAGATGGGCTGCGGAGATCCGAGACCCTGTGAAGCGTACGAGGTTGTGGTTAGGAACCTACGACACTGCCGAAGAAGCCGCCATGGTTTATGACAGAGAAGCCATTCGCCTTCGAGGTTCTCATGCTCAAACTAATTTCCTCAAGCCTCCAAAGGAGGAAGAATATGATGAACAAGTTTTTGATATCAACAATATGAAGAACATGCCTTCTCCTATTTCTCCTACTTCTCCCACTTCTGTTCTTCTATTTCAGTCTGATGGATCTGGAAGTAAGGTTTCAGGAGAGGATCAAAGCGAGTTCAGAGATGAATCTCCTTCTTCTTCCTATTTTCAGGATGCATTGTTTTTAGATTCACCTTCTATTGATTTTTGTTTATCGGATTTTGAGACTCCTCCCCCAATATTTCTTGATGAAACTTGCCTACCCCATCTTATTTTCAGTGACAGCAATTTCAGTGATGCTACCATTGACCAGTCTATTGAATTATGTAATTTCGATTTAGATGATTACTTTTGCAGTGATCAAGAGGAAGCTTTTCATGTTTAG 909 0.4235 MCRKTVICKVREPGVGHTLNAETTPKVVRVSVMDPEITDSSSDEEEYQQYQGRRTKVNSKHIVNEIRILYPPSHNTTKVQRSKQQQQQNKGKKVVVAAMKASSSCSQEGRKLRGVRQRPWGRWAAEIRDPVKRTRLWLGTYDTAEEAAMVYDREAIRLRGSHAQTNFLKPPKEEEYDEQVFDINNMKNMPSPISPTSPTSVLLFQSDGSGSKVSGEDQSEFRDESPSSSYFQDALFLDSPSIDFCLSDFETPPPIFLDETCLPHLIFSDSNFSDATIDQSIELCNFDLDDYFCSDQEEAFHV* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0204 302 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Amo06g0204 302 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Amo06g0204 302 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Amo06g0204 302 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Amo06g0204 302 MobiDBLite consensus disorder prediction 205 226 - -
Amo06g0204 302 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Amo06g0204 302 SUPERFAMILY DNA-binding domain 111 167 IPR016177 GO:0003677
Amo06g0204 302 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Amo06g0204 302 Gene3D AP2/ERF domain 111 169 IPR036955 GO:0003700|GO:0006355
Amo06g0204 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 4 294 - -
Amo06g0204 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0204 Amo-Chr6 2997140 2998053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0204 4 206 AP2-EREBP Transcription Factor Family AT4G27950 42.925 1.39e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo06g0204 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0204 - - adu:107491972 582.408