Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0199 ATGCCGAAGAACAAGGGAAAGGGAGGGAAGAACAGGAAGAGGGGGAAGAACGAAGCGGACGACGACAAGAGAGAGCTGGTTTTCAAGGAGGACGGACAGGAATACGCGCAGGTCCTCCGTATGCTCGGTAACGGCCGCTGTGAAGCAATGTGCATCGACGGCATCAAGAGGCTCTGTCATATCAGAGGCAAGATGCACAAAAAGGTGTGGATCGCCGCCGGTGACATCATCCTCGTCGGCCTCCGCGACTTCCAGAACGACAAGGCTGACGTTATCCTCAAGTACATGGCTGACGAGGCCAGACTTCTCAAGGCCTACGGCGAGCTCCCTGACACCACCCGCCTCAACGAGACCGTCGGTGGTGGCCTCGAGGATGACGAAGACCAGTTTGGCGACGACTATGTCGAGTTCGAGGATGAGGATATCGATAAAATCTAA 438 0.5571 MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCHIRGKMHKKVWIAAGDIILVGLRDFQNDKADVILKYMADEARLLKAYGELPDTTRLNETVGGGLEDDEDQFGDDYVEFEDEDIDKI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0199 145 MobiDBLite consensus disorder prediction 1 24 - -
Amo06g0199 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Amo06g0199 145 SUPERFAMILY Nucleic acid-binding proteins 2 141 IPR012340 -
Amo06g0199 145 Gene3D - 2 145 IPR012340 -
Amo06g0199 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Amo06g0199 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Amo06g0199 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Amo06g0199 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Amo06g0199 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Amo06g0199 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Amo06g0199 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Amo06g0199 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0199 Amo-Chr6 2969090 2970000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0199 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 87.586 1.32e-86 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0199 K03236 - oeu:111390466 259.996